Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,756,383 – 5,756,488 |
Length | 105 |
Max. P | 0.633972 |
Location | 5,756,383 – 5,756,488 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 86.57 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -20.64 |
Energy contribution | -22.24 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.74 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5756383 105 + 27905053 UGGCGAAACCUCUUGGUUUAAGCUUAAGGUAAACACUCAGAAUAUCUGUUUACC-U--GAGUAAGA-ACGGCCAAUCAUUUUGCCGGUCCUACCCGGUUUUUAAUCGCA ((((.(((((....)))))..(((((.((((((((...........))))))))-)--))))....-...))))........(((((......)))))........... ( -29.60) >DroSec_CAF1 48716 106 + 1 UGGCGAAACCUCUUGGUUUUAGCUUAAGGGAAACACUCAGAAUAUCUGUUUACC-U--GAGCAAGAGACGACCAAUCAUUUUGCCGGUCCUACCCGGUUUUUAAUCGCA ..((((...((((((.............(....).(((((.............)-)--)))))))))...............(((((......)))))......)))). ( -26.52) >DroSim_CAF1 48634 107 + 1 UGGCGAAACCUCUUGGUUUUAGCUUAAGGUAAACACUCAGAAUAUCUGUUUAGCAA--GAGCAAGAGACGGCCAAUCAUUUUGCCGGUCCUACCCGGUUUUUAAUCGCA ..((((...((((((.((((.(((..(((((..(.....)..)))))....)))))--)).))))))...............(((((......)))))......)))). ( -28.90) >DroEre_CAF1 43822 106 + 1 UGGCGUUACCUCUUGGUUUUAGCCCAUAGUAAACAACCAGAAUGUCUGUUUACC-U--AGGCAAGAAACCGCCGCUUAUUUUGCCGGUCCUACCCGGUUUUUAAUAGCA .((((..(((....)))....(((....(((((((..(.....)..))))))).-.--.))).......))))(((......(((((......))))).......))). ( -31.12) >DroYak_CAF1 32477 108 + 1 UGUCAAAACCUCUUGGUUUCAGCUCAAAGUAAACACCCAGAAUAUCUGUUUACC-UAUAGGCAAGAAGCCGCCGUUCAGUUUGCCGGUCCUACCCGGUUUUUAAUCGCA .((..(((((....)))))..)).....(((((((...........))))))).-....(((.....)))((.(((.((...(((((......))))).)).))).)). ( -24.10) >consensus UGGCGAAACCUCUUGGUUUUAGCUUAAGGUAAACACUCAGAAUAUCUGUUUACC_U__GAGCAAGAAACGGCCAAUCAUUUUGCCGGUCCUACCCGGUUUUUAAUCGCA ((((((((((....)))))).((((..((((((((...........))))))))....))))........))))........(((((......)))))........... (-20.64 = -22.24 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:44 2006