Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,748,798 – 5,748,906 |
Length | 108 |
Max. P | 0.836857 |
Location | 5,748,798 – 5,748,906 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -32.04 |
Consensus MFE | -28.56 |
Energy contribution | -28.40 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.37 |
Structure conservation index | 0.89 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5748798 108 - 27905053 UUCAAAAGUCUUUACAAA---AAAUACCAUUUCAAGUGGCAGAUUGAUGUUCGUCAGUUGUUGUGGCGCUUGAAAAUCGAAUGUGGUAGCUGGUGCUCGGGGCAUGCCGCA ..................---........(((((((((.(((((((((....)))))))....)).)))))))))......((((((((((.........))).))))))) ( -28.50) >DroSec_CAF1 40042 110 - 1 UUCAUAAGUCUUUACAAAA-AAAAUGCCAUUUCAAGUGGCGGAUUGAUGUUCGUCAGUUGUUGUGGCGCUUGAAAAUCGAAUGUGGUAGCUGGUGCUCGGGGCAUGCCACA ...................-.....(((((..(((.((((((((....)))))))).)))..)))))..............((((((((((.........))).))))))) ( -33.60) >DroSim_CAF1 41159 111 - 1 UUCAUAAGUCUUUACAAAAAAAAAUGCCAUUUCAAGUGGCGGAUUGAUGUUCGUCAGUUGUUGCGGCGCUUGAAAAUCGAAUGUGGUAGCUGGUGCUCGGGGCAUGCCACA .............................(((((((((.(((((((((....)))))))....)).)))))))))......((((((((((.........))).))))))) ( -29.70) >DroEre_CAF1 35940 107 - 1 CUCAAAAGUCUUUACAA----AAAUGCCAUUUCAAGUGGCAGAUUGAUAUUCGUCAGUUGUUGUGGCGCUUGAAAGCUGAAUGUGGUAGCUGCUGCUCGGGGCAUGCCACA ......((.((((.(((----...((((((..(((.((((..((....))..)))).)))..)))))).)))))))))...((((((((((.(.....).))).))))))) ( -34.70) >DroYak_CAF1 24165 108 - 1 UUCAAAAGUCUUUACAAA---AAAUGCCACUUCAAGUGGCAGAUUGAUAUUCGUCAGUUGUUGUGGCGGUUGAAAACUGAAUGUGGUAGCUGGUGCUCGGGGCAUGCCACA (((((..(((...((...---...((((((.....))))))(((((((....)))))))))...)))..))))).......((((((((((.........))).))))))) ( -33.70) >consensus UUCAAAAGUCUUUACAAA___AAAUGCCAUUUCAAGUGGCAGAUUGAUGUUCGUCAGUUGUUGUGGCGCUUGAAAAUCGAAUGUGGUAGCUGGUGCUCGGGGCAUGCCACA ((((...(((...((.........((((((.....))))))(((((((....)))))))))...)))...)))).......((((((((((.........))).))))))) (-28.56 = -28.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:38 2006