Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,748,057 – 5,748,165 |
Length | 108 |
Max. P | 0.998441 |
Location | 5,748,057 – 5,748,165 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -22.62 |
Energy contribution | -24.96 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.12 |
Mean z-score | -3.71 |
Structure conservation index | 0.65 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5748057 108 - 27905053 AACUCAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACUUGGAACAACUAU ..(((((---(((((((((.(((......))).))))))))))))))....(((((....)))))..............((((((.............))))))....... ( -38.92) >DroSec_CAF1 39299 108 - 1 AACUUAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGGGUAACGCGGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCCUCCACUUGGAACUACUAU .((((((---(((((((((.(((......))).)))))))))))))))...((((.....((((....)))).))))..((((((.............))))))....... ( -41.02) >DroSim_CAF1 40401 108 - 1 AACUCAU---ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACAUGGAACUACUAU ..(((((---(((((((((.(((......))).))))))))))))))....(((((....)))))...........................((((....))))....... ( -38.50) >DroEre_CAF1 35239 82 - 1 AA-----------------------------CCACGGGGCGUAUGAGCAAUGCUGUGCCUGCAGCACUUUGCUCCGCUUUUCCAAAUCAAUCUUUCACUGGAUACUAUUAU ..-----------------------------....((((((...((((((((((((....))))))..))))))))))...))......((((......))))........ ( -22.20) >DroYak_CAF1 23402 111 - 1 AACUCAUACUACGCCUCGUUGUCAUCUGUGGCCACGGGGCGUAUGAGCAACGCUGUGCUUGCAGCACUUUGCUCCGCUUUUCCCAUUCGAUCUUUCACUUGCAACUAUUAC .........((((((((((.((((....)))).)))))))))).((((((.(((((....)))))...))))))..................................... ( -34.50) >consensus AACUCAU___ACGCCUCGUUGUCAUCUGCGGCCACGGGGCGUAUGAGCAACGCUGUGCCUGCAGCACUCUGCUCCGCUUUUCCAAUUCAAUCUUCCACUUGGAACUACUAU ..........(((((((((.(((......))).)))))))))..(((((..(((((....)))))....)))))..................((((....))))....... (-22.62 = -24.96 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:37 2006