Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,739,071 – 5,739,164 |
Length | 93 |
Max. P | 0.622509 |
Location | 5,739,071 – 5,739,164 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.76 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -17.51 |
Energy contribution | -18.15 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.11 |
Mean z-score | -1.81 |
Structure conservation index | 0.69 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5739071 93 + 27905053 ---UCCCUGCACACUUGCAGUCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC--- ---...(((((....)))))(((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))))......--- ( -23.40) >DroPse_CAF1 36307 94 + 1 CCACUGCUGC-----UGCAGCCACACACAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUUGUCCGGCCGGAUCGCGAUAAGUCAGC .....(((((-----(...((.........((((((((............))))))))((.((((..(-------((...))).))))))...))....)).)))) ( -23.30) >DroSec_CAF1 30583 93 + 1 ---UUGCUGCAUACUUGCAGCCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC--- ---..((((((....))))))((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))).......--- ( -26.30) >DroSim_CAF1 31207 93 + 1 ---UCGCUGCAUACUUGCAGCCGUGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUCGGCCGUUCCGAUCGCGAUAAGUC--- ---..((((((....))))))((((.((..((((((((............))))))))...((((...-------.....)))).....)).)))).......--- ( -26.60) >DroEre_CAF1 26240 100 + 1 ---UCGCUGCAUACUUGCAGCCGCGUUUACUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAGAGACAUCACAUCGCCCGUUGCGAUCGCGAUAAGUC--- ---..((((((....))))))(((((((.(((....(((...((((((....))))))...))).))))))).....(((((.....))))).))).......--- ( -28.50) >DroPer_CAF1 35912 94 + 1 CCACUGCUGC-----UGCAGCCACACACAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG-------ACAUUGUCCGGCCGGAUCGCGAUAAGUCAGC .....(((((-----(...((.........((((((((............))))))))((.((((..(-------((...))).))))))...))....)).)))) ( -23.30) >consensus ___UCGCUGCAUACUUGCAGCCGCGUUUAUUUAUUUGCCAACUCAUUUAAGCAAAUGACCAGGCCAAG_______ACAUCGGCCGUUCCGAUCGCGAUAAGUC___ .....((((((....)))))).......(((((((.(((...((((((....))))))...))).............(((((.....)))))...))))))).... (-17.51 = -18.15 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:32 2006