Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,738,328 – 5,738,427 |
Length | 99 |
Max. P | 0.789403 |
Location | 5,738,328 – 5,738,427 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -21.18 |
Energy contribution | -21.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5738328 99 + 27905053 UUCCACUUCAAUUAGCCUUUUACUCGGCGGCUAAAAGAGAAGCGCCUGCAUUUCGCCUGUUUUCGUUGUGGGUUUAUUACCA---------AAUUGGAGUGCGUUAAU ...((((((((((.(((........)))((.(((..((((.((....)).))))(((..(.......)..)))...))))).---------))))))))))....... ( -24.80) >DroSec_CAF1 29856 98 + 1 UUCCACUUCAAUUAGCCUUUUAGUGGGCGGCUAAAACAGAAGCGCCUGCAUUUCGCCUGUUUUCGUUGUG-GUUUAUUACCA---------AAUUGGAGUGCGUUAAU ...((((((((((.((((......))))(((.(((((((..(((.........)))))))))).))).((-((.....))))---------))))))))))....... ( -28.40) >DroSim_CAF1 30461 98 + 1 UUCCACUUCAAUUAGCCUUUUACUCGGCGGCUAAAACAGAAGCGCCUGCAUUUCGCCUGUUUUCGUUGUG-GUUUAUUACCA---------AAUUGGAGUGCGUUAAU ...((((((((((.(((........)))(((.(((((((..(((.........)))))))))).))).((-((.....))))---------))))))))))....... ( -26.70) >DroEre_CAF1 25485 98 + 1 UUCCACUUCAAUUAGCCUUUUGCUCGUCGGCCAAAACAGAAGCGCCUGCAUUUCGCCUGUUUUCGUUGUG-GUUUAUUACCA---------AAUUGGAGUGCGUUAAU ...(((((((((((((.....)))...((((.(((((((..(((.........)))))))))).))))((-((.....))))---------))))))))))....... ( -24.40) >DroYak_CAF1 13299 107 + 1 UUCCACUUCAAUUAGCCUUUUACUCGGCGGCUAAAACAGAAGCGGCUGCAUUUCGCCUGUUUUCGUUGUG-GUUUAUUACCAAAUUGACCAAAUUGGAGUGCGUUAAU ...((((((((((.(((........)))((.((((((..(((((((........))).))))..))).((-((.....))))..))).)).))))))))))....... ( -29.70) >consensus UUCCACUUCAAUUAGCCUUUUACUCGGCGGCUAAAACAGAAGCGCCUGCAUUUCGCCUGUUUUCGUUGUG_GUUUAUUACCA_________AAUUGGAGUGCGUUAAU ...((((((((((.(((........)))(((.(((((((..(((.........)))))))))).)))........................))))))))))....... (-21.18 = -21.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:31 2006