Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,737,167 – 5,737,263 |
Length | 96 |
Max. P | 0.987569 |
Location | 5,737,167 – 5,737,263 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -21.44 |
Consensus MFE | -15.08 |
Energy contribution | -15.88 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -3.12 |
Structure conservation index | 0.70 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5737167 96 - 27905053 CAUGUUGCCUUGCUGAGCGUUGGAAGGAGA-AAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU ((((((.((((.(........).))))...-.......))))))................(((((((((....).(((.......))).)))))))) ( -22.40) >DroSec_CAF1 28745 95 - 1 CAUGUUGCCUUGCUGAGCGUUGGAAGGAG--AAAAAAUAACUUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU .......((((.(........).))))..--.........((((........))))....(((((((((....).(((.......))).)))))))) ( -21.50) >DroSim_CAF1 29344 97 - 1 CAUGUUGCCUUGCUGAGCGUUGGAAGGAGAGAAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUC ((((((.((((.(........).))))...........)))))).................((((((((....).(((.......))).))))))). ( -21.50) >DroEre_CAF1 24326 82 - 1 CAUGUUGCGUUGCA--------------AA-AACAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU ((((((...(((..--------------..-..)))..))))))................(((((((((....).(((.......))).)))))))) ( -20.00) >DroYak_CAF1 12125 81 - 1 CACGUUGCCUUGCA--------------AA-AAGC-AAAACAUGGUUAUAAGCAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU .......((((((.--------------..-.(((-........)))....))))))...(((((((((....).(((.......))).)))))))) ( -21.80) >consensus CAUGUUGCCUUGCUGAGCGUUGGAAGGAGA_AAAAAAAAACAUGGUAAUAAACAGGGAAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUU ..(((((((..................................)))))))..........(((((((((....).(((.......))).)))))))) (-15.08 = -15.88 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:30 2006