| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,719,932 – 5,720,030 |
| Length | 98 |
| Max. P | 0.670010 |
| Location | 5,719,932 – 5,720,030 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.53 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -14.83 |
| Energy contribution | -18.33 |
| Covariance contribution | 3.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5719932 98 + 27905053 GCAGUUGCAUUCGCAGUUGCAGUUUGCUGUCGUCAUAUGUGGAAAUUCGUGCGCUUUUAUUGCACUGCGUUGCAUUGUUUUUCGAGCAUUGCCGCUCU (((((.(((..((((((.(((((.....(.((.(((..((....))..))))))....))))))))))).)))))))).....((((......)))). ( -31.20) >DroYak_CAF1 24174 98 + 1 GCAGUUGCAAUCGCAGUUGCAGUUCGCUGUCGUCAUAUGUGGAAAUUCGUGCGCCUUUAUUGCACUGCGUUGCAUUGUUUUUCGAGCAUUGCCGCUCU (((((.((((.((((((.(((((.....(.((.(((..((....))..))))).)...)))))))))))))))))))).....((((......)))). ( -32.10) >DroAna_CAF1 20869 76 + 1 -CAGUCGACUUGGCAGUU-------GCUGUCGUCAUAAGUGGAAAUUCAUGCGAUUUUAUUGCACUGCUUUGCAUUGUAUUUA-----U--------- -((((.(.(..((((((.-------((.((((.(((.(((....))).)))))))......))))))))..))))))......-----.--------- ( -18.50) >consensus GCAGUUGCAUUCGCAGUUGCAGUU_GCUGUCGUCAUAUGUGGAAAUUCGUGCGCUUUUAUUGCACUGCGUUGCAUUGUUUUUCGAGCAUUGCCGCUCU (((((.((...((((((.(((((.......((.(((..((....))..))))).....)))))))))))..))))))).....((((......)))). (-14.83 = -18.33 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:17 2006