Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,713,201 – 5,713,292 |
Length | 91 |
Max. P | 0.999466 |
Location | 5,713,201 – 5,713,292 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.78 |
Mean single sequence MFE | -38.82 |
Consensus MFE | -22.08 |
Energy contribution | -21.89 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -3.39 |
Structure conservation index | 0.57 |
SVM decision value | 3.63 |
SVM RNA-class probability | 0.999466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5713201 91 + 27905053 GCCCAAUUUGACCCAGUUGCUC--------------GA------ACAAAACAAAAUGUU---UCACUCGGUUGGCAGGC----AAAAUGGGUCAAAUGGUUCGAU--GCCGGCAGGGCAA ((((.((((((((((.((((((--------------.(------((.((((.....)))---)......))).)..)))----))..))))))))))(((.....--)))....)))).. ( -32.50) >DroEre_CAF1 12803 91 + 1 GCCCUAUUUGACCCAGUUGCUC--------------GA------ACCAAACAAAAUGUU---UCACUCGGUUGGCAGGC----GAAAUGGGUCAAAUGGUUCGAU--GCCGGCAGGGCAA (((((((((((((((.((((((--------------.(------(((((((.....)))---).....)))).)..)))----))..))))))))))(((.....--)))...))))).. ( -35.90) >DroYak_CAF1 17172 91 + 1 GCCCCAUUUGACCCAGUUGCUC--------------GA------ACCAAACAAAAUGUU---UCACUCGGUUGGCAGGC----GAAAUGGGUCAAAUGGUUCGAU--GCCGGCGGGGCAA (((((((((((((((.((((((--------------.(------(((((((.....)))---).....)))).)..)))----))..))))))))))(((.....--)))...))))).. ( -38.70) >DroAna_CAF1 13566 119 + 1 GCCCUAGUUGACCCAGUUGCAGUAGCCGGGCCAGGCGAGCAGCUACCAAACAAAACACUGCCAUGCUCGGUUGGCAAGGAACGAAAAUGGGUCAAACA-CUCGAUGUGCCGGCAGGGCAA (((((..((((((((.((...((..((..(((((.((((((((................))..)))))).)))))..)).))..)).)))))))).((-(.....))).....))))).. ( -48.19) >consensus GCCCUAUUUGACCCAGUUGCUC______________GA______ACCAAACAAAAUGUU___UCACUCGGUUGGCAGGC____AAAAUGGGUCAAAUGGUUCGAU__GCCGGCAGGGCAA (((((((((((((((.(((((...........................(((....((......))....))))))))..........))))))))))...(((......))).))))).. (-22.08 = -21.89 + -0.19)
Location | 5,713,201 – 5,713,292 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.78 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -23.67 |
Energy contribution | -23.80 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.12 |
Mean z-score | -2.65 |
Structure conservation index | 0.66 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.997980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5713201 91 - 27905053 UUGCCCUGCCGGC--AUCGAACCAUUUGACCCAUUUU----GCCUGCCAACCGAGUGA---AACAUUUUGUUUUGU------UC--------------GAGCAACUGGGUCAAAUUGGGC .((((.....)))--).....((((((((((((..((----((........((((..(---(((.....))))..)------))--------------).)))).))))))))).))).. ( -31.50) >DroEre_CAF1 12803 91 - 1 UUGCCCUGCCGGC--AUCGAACCAUUUGACCCAUUUC----GCCUGCCAACCGAGUGA---AACAUUUUGUUUGGU------UC--------------GAGCAACUGGGUCAAAUAGGGC ..(((((...((.--......))((((((((((.((.----((...(.(((((((..(---(....))..))))))------).--------------).)))).))))))))))))))) ( -33.20) >DroYak_CAF1 17172 91 - 1 UUGCCCCGCCGGC--AUCGAACCAUUUGACCCAUUUC----GCCUGCCAACCGAGUGA---AACAUUUUGUUUGGU------UC--------------GAGCAACUGGGUCAAAUGGGGC .((((.....)))--)..(..((((((((((((.((.----((...(.(((((((..(---(....))..))))))------).--------------).)))).))))))))))))..) ( -36.30) >DroAna_CAF1 13566 119 - 1 UUGCCCUGCCGGCACAUCGAG-UGUUUGACCCAUUUUCGUUCCUUGCCAACCGAGCAUGGCAGUGUUUUGUUUGGUAGCUGCUCGCCUGGCCCGGCUACUGCAACUGGGUCAACUAGGGC ..((((((...((((.....)-)))((((((((.((.(((.((..((((..((((((((.(((........))).))..))))))..))))..))..)).).)).)))))))).)))))) ( -42.40) >consensus UUGCCCUGCCGGC__AUCGAACCAUUUGACCCAUUUC____GCCUGCCAACCGAGUGA___AACAUUUUGUUUGGU______UC______________GAGCAACUGGGUCAAAUAGGGC ..(((((..(((....)))....((((((((((............((((((.(((((......))))).).)))))........(((......))).........))))))))))))))) (-23.67 = -23.80 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:16 2006