Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,712,913 – 5,713,010 |
Length | 97 |
Max. P | 0.524071 |
Location | 5,712,913 – 5,713,010 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -15.17 |
Energy contribution | -15.07 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.13 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5712913 97 - 27905053 AACCUGGGAAGCAACGCCGGCAACGCCGUAAACGAGACUCGAAUUGUUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUAGGUAUUUAUAUAUAUUU- .(((((((.(((.(((.((....)).)))..(((((((((((.(((.....)))))))))).))))......))).)))))))..............- ( -27.90) >DroEre_CAF1 12519 89 - 1 AACCUGGGAAGCAC--CCGGCAACC---AAAACUCGACUCAAAUUGCUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGUCAUUUACUUAU----U ...((((((((((.--..(....)(---.......)........))))))))))..((((...((.(.((........))).))...))))..----. ( -18.90) >DroYak_CAF1 16864 92 - 1 AACCUGGGAAGCAC--CCGGCAACC---AA-ACGAGACUCAAAUCACUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGGUAUUUAUUUAUUUUUU ...(((((.....)--)))).....---((-(..((((((((((.(((....((.(((....))).))...))).)))))))).))..)))....... ( -18.00) >consensus AACCUGGGAAGCAC__CCGGCAACC___AAAACGAGACUCAAAUUGCUUCCCAGUCGAGUCAUUGUCUCAUAGUUAUUUGGGUAUUUAUUUAU_UUUU ...(((((((((......(....)...........((......)))))))))))..(((.......)))............................. (-15.17 = -15.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:14 2006