| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,710,226 – 5,710,336 |
| Length | 110 |
| Max. P | 0.999976 |
| Location | 5,710,226 – 5,710,336 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.65 |
| Mean single sequence MFE | -47.20 |
| Consensus MFE | -29.45 |
| Energy contribution | -32.26 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.62 |
| SVM decision value | 5.15 |
| SVM RNA-class probability | 0.999976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5710226 110 + 27905053 GCGUUGACAGGGGCGUCCGUCGCAGGGGGAUGACCCACUAAUGGAGUUUCCCUG-UAACCGGCGAU--------GCCUAUGCUCGC-AUCGAGUACGCCCCUGGCCAGUGACAAUGCUAC ((((((.(((((((((((((..(((((..((...(((....))).))..)))))-..).)))((((--------((........))-))))...)))))))))........))))))... ( -50.80) >DroEre_CAF1 9777 113 + 1 GCGUUGACAGGGGCGUCCCUCGAAAGGGGAUGACCCACUAAUGGAGAUUCCCUGGCAGCCGGCCAUAGCCAGUGGUCCAGGCUGGCAAUCGAGUACGC-------CAGUGACAAUGCUAC ((((((.((..(((((..(((((.(((((((...(((....)))..)))))))(.(((((((((((.....)))).)).))))).)..))))).))))-------)..)).))))))... ( -52.90) >DroYak_CAF1 14117 88 + 1 GCGUUGACAGGGGCGUCCGUCGCAAGGGGAUGACCCACUAAUGGAGAUUCCCUG--------------------------------UAUCGAGUACGCCCCUGGCCAGUGACAAUGCUAC ((((((.((((((((((((..(((.((((((...(((....)))..))))))))--------------------------------)..)).).)))))))))........))))))... ( -37.90) >consensus GCGUUGACAGGGGCGUCCGUCGCAAGGGGAUGACCCACUAAUGGAGAUUCCCUG__A_CCGGC_AU________G_C_A_GCU_GC_AUCGAGUACGCCCCUGGCCAGUGACAAUGCUAC ((((((.(((((((((.(.(((..(((((((...(((....)))..)))))))....(((((((...............)))))))...)))).)))))))))........))))))... (-29.45 = -32.26 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:13 2006