Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,709,370 – 5,709,466 |
Length | 96 |
Max. P | 0.815350 |
Location | 5,709,370 – 5,709,466 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -21.40 |
Energy contribution | -21.22 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.94 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5709370 96 + 27905053 GCCAAAAACAAAAUGGCAGCCUCCCAAGCUCCGAAAAACUACAACGCAAUAUGGUCGCCAUUUUGUUUUCUCACCGUUAUGUUG----GGCCCUAUGCUC (((.(((((((((((((.(((......((................)).....))).))))))))))))).....((......))----)))......... ( -22.89) >DroEre_CAF1 8903 96 + 1 GCCAAAAACAAAAUGGCAGCCUCCCAAGCUCCGAAAAACUACAACGCAAUAUGGUCGCCAUUUUGUUUUCUCACCGUUAUGUUG----GGCCCUAUGCUC (((.(((((((((((((.(((......((................)).....))).))))))))))))).....((......))----)))......... ( -22.89) >DroYak_CAF1 13211 96 + 1 GCCAAAAACAAAAUGGCAGCCUCCCAAGCUCCGAAAAACUACAACGCAAUAUGGUCGCCAUUUUGUUUUCUCACCGUUAUGUUG----GGCCCUAUGCUC (((.(((((((((((((.(((......((................)).....))).))))))))))))).....((......))----)))......... ( -22.89) >DroAna_CAF1 8389 100 + 1 GCCAAAAACAAAAUGGCAGCUUCCCAAGCUCCGAAUAACUACAACGCAAUAUGGUCGCCAUUUUGUUUUCUCACCGUUAUGUUGCUCUGGCCCUAUGCUC (((((((((((((((((((((.....))))(((.((..(......)..)).)))..)))))))))))))......((......))..))))......... ( -22.80) >consensus GCCAAAAACAAAAUGGCAGCCUCCCAAGCUCCGAAAAACUACAACGCAAUAUGGUCGCCAUUUUGUUUUCUCACCGUUAUGUUG____GGCCCUAUGCUC (((.(((((((((((((.(((......((................)).....))).)))))))))))))..((......)).......)))......... (-21.40 = -21.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:12 2006