Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,705,844 – 5,705,947 |
Length | 103 |
Max. P | 0.686423 |
Location | 5,705,844 – 5,705,947 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 87.10 |
Mean single sequence MFE | -34.00 |
Consensus MFE | -21.66 |
Energy contribution | -22.22 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.28 |
Structure conservation index | 0.64 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5705844 103 + 27905053 GUGGCAGGCCACUUGAGUAAGGACCCCUUGUUUUGGGUUU-------UCGGUAUUUGGAUUUUCGGUUCUGGAAACUCUGGACAU----GGUAUGGUAUUGAUAUUGGUCUGGG ....(((((((..(.((((...(((...((((..((((((-------((((...((((....))))..))))))))))..)))).----)))....)))).)...))))))).. ( -32.50) >DroSec_CAF1 9183 91 + 1 GUGGCAGGCCACUUGAGUAAGGACCCCUUGUUUUGGGUUU-------UCGGUAUUUGGAUUUUCGGUUCUGGAAACUCUGGACAU----GGUAUG------------GUCUGGG ((((....))))........(((((((.((((..((((((-------((((...((((....))))..))))))))))..)))).----))...)------------))))... ( -30.90) >DroSim_CAF1 8651 103 + 1 GUGGCAGGCCACUUGAGUAAGGACCCCUUGUUUUGGGUUU-------UCGGUAUUUGGAUUUUCGGUUCUGGAAACUCUGGACAC----GGUAUGGUAUUGAUAUUGGUCUGGG ....(((((((..(.((((...(((...((((..((((((-------((((...((((....))))..))))))))))..)))).----)))....)))).)...))))))).. ( -31.80) >DroYak_CAF1 9418 114 + 1 GUGCCAGGCCACUUGAGUAAGAACCCCGUGUUUUGGGUUUUCGGUUUUCGGUAUUUGGAUUUUCGGUUCUGGAAACUCUGGACAUGGAUGGCAUGGUAUUGAUAUUGGUCUGGG ...((((((((..(.((((....(((((((((..((((((((((...((((...........))))..))))))))))..)))))))..)).....)))).)...)))))))). ( -40.80) >consensus GUGGCAGGCCACUUGAGUAAGGACCCCUUGUUUUGGGUUU_______UCGGUAUUUGGAUUUUCGGUUCUGGAAACUCUGGACAU____GGUAUGGUAUUGAUAUUGGUCUGGG ....(((((((((.((((..((((((........)))))).............((..((........))..)).)))).)).(((.......)))..........))))))).. (-21.66 = -22.22 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:09 2006