Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,704,246 – 5,704,337 |
Length | 91 |
Max. P | 0.888562 |
Location | 5,704,246 – 5,704,337 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 85.77 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -19.88 |
Energy contribution | -19.32 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -2.28 |
Structure conservation index | 0.72 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5704246 91 + 27905053 G------AAUAGCUAUUGGAAUC------GGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUUGUGUGAAAACGUGUGACUUACAAGCUUUAAUUCUUA (------(((.((((..(((...------....)))..))))......((((.......(((((((((..((....))..)))))))))))))...))))... ( -20.81) >DroSec_CAF1 7620 97 + 1 G------AAUCGCUAUUGGAAUCGGAAUCGGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUUGUAGGAAAACGUGCGACUUACAAGCUUCAACUCUUA (------((.(((((..(((.((.......)).)))..))))...((((....))))..(((((((((((.(....).))))))))))).).)))........ ( -24.60) >DroSim_CAF1 7097 97 + 1 G------AAUCGCUAUUGGAAUCGGAAUCGGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUUGUAGGAAAACGUGCGACUUACAAGCUUCAACUCUUA (------((.(((((..(((.((.......)).)))..))))...((((....))))..(((((((((((.(....).))))))))))).).)))........ ( -24.60) >DroEre_CAF1 3488 103 + 1 GAUUCAGAAUCGGCAUUGGAAUCAGAAUCGGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUCGUAUGAAAACGUGCGACUUACAAGCUCCAACUCCUA (((((.((.((.......)).)).)))))(((......((((.......))))(((...(((((((((((((....)))))))))))))....)))..))).. ( -32.40) >DroYak_CAF1 7783 103 + 1 GAAUCAGAAUCAGAAUCGGUAUUGGAAUUGGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUCGUAUGGAAACGUGCGACUUACAAGCUCCAACUCCUA ((.((.......)).))......(((.((((((((...((((.......)))).)))..(((((((((((((....)))))))))))))...))))).))).. ( -36.00) >consensus G______AAUCGCUAUUGGAAUCGGAAUCGGAAUCUUUUGGCAUAAUCAGCUAUGGUAAUGUGAGUUGUAUGAAAACGUGCGACUUACAAGCUUCAACUCUUA .............................((((((...((((.......)))).)))..(((((((((((((....)))))))))))))...)))........ (-19.88 = -19.32 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:08 2006