Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,700,526 – 5,700,635 |
Length | 109 |
Max. P | 0.725846 |
Location | 5,700,526 – 5,700,635 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.01 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -18.85 |
Energy contribution | -18.48 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -1.98 |
Structure conservation index | 0.74 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5700526 109 + 27905053 AAAACCCAAGACAAACGGGCCCUCUUCUGGUGUUCCGUUUAGUUUUUUUGGGCAAUUUU-GAAGCAAAAUAGCCGCAUUCAC--AAAGCGAAAC-GCA------AAAAACCUAAAAGUC .........(((((((((((((......)).).)))))))((.((((((((((.(((((-(...)))))).)))((......--...)).....-.))------))))).))....))) ( -24.80) >DroSec_CAF1 3859 108 + 1 AAAACCCAAGACAAACGGGCCCUCUUCUGGUGUUCCGUUUAGUUU-UUUGGGCAAUUUU-GAAGCAGAAUAGCCACAUUCAC--AAAGCGAAAC-GCA------AAAAACAUAAAAGUC .........(((((((((((((......)).).))))))).((((-(((((((.(((((-(...)))))).)))...(((..--.....)))..-.))------))))))......))) ( -26.60) >DroSim_CAF1 3363 108 + 1 AAAACCCAAGGCAAACGGGCCCUCUUCUGGUGUUCCGUUUAGUUU-UUUGGGCAAUUUU-GAAGCAGAAUAGCCACAUUCAC--AAAGCGAAAC-GCA------AAAAACAUAAAAGUC .........(((((((((((((......)).).))))))).((((-(((((((.(((((-(...)))))).)))...(((..--.....)))..-.))------))))))......))) ( -26.00) >DroYak_CAF1 3795 118 + 1 AAAACCCAAGAUAAACGGGCCCACUUCUGGUGUUCCGUUUAGUUU-UUUGGGCGAUUUUCAAAGCAAAACAGCCACAUCCACCAAAAGCGAAAAGGCAGAAAAUAAAAACCUAAAAGUC ....(((((((((((((((((((....))).).))))))))...)-))))))..((((((...((......))..............((......)).))))))............... ( -25.00) >consensus AAAACCCAAGACAAACGGGCCCUCUUCUGGUGUUCCGUUUAGUUU_UUUGGGCAAUUUU_GAAGCAAAAUAGCCACAUUCAC__AAAGCGAAAC_GCA______AAAAACAUAAAAGUC .........(((((((((((((......)).).))))))).((((...(((((.(((((......))))).))).))..........((......)).........))))......))) (-18.85 = -18.48 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:04 2006