Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,695,440 – 5,695,632 |
Length | 192 |
Max. P | 0.698039 |
Location | 5,695,440 – 5,695,553 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.23 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -19.15 |
Energy contribution | -18.60 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.19 |
Mean z-score | -1.30 |
Structure conservation index | 0.61 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5695440 113 + 27905053 AUUCCGCCAGCAAAAAAAAAAAAAAAACUCGA-AAGUAGGUCAGUAAGUGACG----UGGCUGGUUGACCCAUUUGCGAC--CUGAAGUUUGCCUAGUUGCAAAGUUGCCAAGGUUGGUU ..((.((((((................(((..-..).))((((.....)))).----..)))))).))........((((--((.((.(((((......))))).))....))))))... ( -29.30) >DroPse_CAF1 12097 98 + 1 UUUUCCA--------------------UGCCA-AAGUAGGUCAGCAAGUGACGUUCGUCGCCGGUUGACCCAUUUGUUGCCCCCAAAAGCUGCAGAGUUGCAAAGUUGGCAAGGCUGCC- ....((.--------------------(((((-(.((((((((((..(((((....)))))..)))))))..(((((.((........)).)))))..)))....)))))).)).....- ( -34.60) >DroPer_CAF1 14502 99 + 1 UUUUCCA--------------------UGCCAAAAGUAGGUCAGCAAGUGACGUUCGUCGCCGGUUGACCCAUUUGUUGCCCCCAAAAGCUGCAGAGUUGCAAAGUUGCCAAGGCUGCC- .......--------------------.((...((((.(((((((..(((((....)))))..))))))).))))...))...........((((..(((((....)).)))..)))).- ( -30.00) >consensus UUUUCCA____________________UGCCA_AAGUAGGUCAGCAAGUGACGUUCGUCGCCGGUUGACCCAUUUGUUGCCCCCAAAAGCUGCAGAGUUGCAAAGUUGCCAAGGCUGCC_ ............................((...((((.(((((((..(((((....)))))..))))))).))))...(((..(((....(((......)))...)))....))).)).. (-19.15 = -18.60 + -0.55)
Location | 5,695,515 – 5,695,632 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.05 |
Mean single sequence MFE | -25.37 |
Consensus MFE | -12.50 |
Energy contribution | -15.06 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.49 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.698039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5695515 117 - 27905053 CAUAAACAAGAGGCAAUCAAAGGGAACUACCCCCCGGCUGCAAAAUC-CCAGACCCAAUAUUCAGGCCAAAGACGCCACCAACCAACCUUGGCAACUUUGCAACUAGGCAAACUUCAG-- .........((((........(((.....)))((..(.((((((...-................(((.......))).((((......))))....)))))).)..))....))))..-- ( -21.60) >DroPse_CAF1 12156 98 - 1 -----------AACAAUCAA-----ACAACCCCCCGAUUGAAGACUUUCUUUACCCCGAAAUCGGGCCAA----GCCUC--GGCAGCCUUGCCAACUUUGCAACUCUGCAGCUUUUGGGG -----------.........-----......((((((.(((((.....))))).((((....))))..((----((...--.((((..((((.......))))..)))).)))))))))) ( -27.80) >DroPer_CAF1 14562 98 - 1 -----------AACAAUCAA-----ACAACCCCCCGAUUGAAGACUUUCUUUACCCCGAAAUCGGGCCAA----GCCUC--GGCAGCCUUGGCAACUUUGCAACUCUGCAGCUUUUGGGG -----------..(((((..-----..........))))).............((((((((.(..(((((----(.((.--...)).)))))).....((((....))))).)))))))) ( -26.70) >consensus ___________AACAAUCAA_____ACAACCCCCCGAUUGAAGACUUUCUUUACCCCGAAAUCGGGCCAA____GCCUC__GGCAGCCUUGGCAACUUUGCAACUCUGCAGCUUUUGGGG .............(((((.................))))).............(((((((.....(((((....(((....)))....)))))....((((......))))..))))))) (-12.50 = -15.06 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:59 2006