Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,682,658 – 5,682,755 |
Length | 97 |
Max. P | 0.845772 |
Location | 5,682,658 – 5,682,755 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.19 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -19.18 |
Energy contribution | -19.70 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.89 |
Structure conservation index | 0.79 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5682658 97 + 27905053 ACAAAGGCAGCUCAGUUGGU-UUGGGUU-UUGUUCAGCUCGAAA--AAGAAAAAACAAAAAAACAAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUUG .....(((.((((.....((-(((..((-(((((....((....--..))...)))))))...))))).....(((..(((.....))).)))))))))). ( -23.90) >DroSec_CAF1 23980 89 + 1 ACAAAGGCAGCCCAGUUGGC-UUGGGUUUUUGUUCGGCUCGAAA--AAAA---------AAAACCAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUCG .....((((((((((.....-)))))))........(((((...--....---------.....((((.....)))).(((.....)))...)))))))). ( -26.60) >DroSim_CAF1 25154 90 + 1 ACAAAGGCAGCCCAGUUGGU-UUGGGUUUUUGUUCGGCUCGAAA--AAAA--------AAAAACAAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUCG .....(((((((((..(.((-(((..(((((.((((...)))).--..))--------)))..)))))....)..)).)))....)))).(((....))). ( -25.00) >DroEre_CAF1 21489 74 + 1 ACAAAGGCAGCCCAGUGGGU-UUGGGUU-UUGUUCA-------------------------CUCAAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUCG .....((((((((((.....-)))))..-.......-------------------------(((((........))))).....))))).(((....))). ( -21.20) >DroYak_CAF1 24729 92 + 1 ACAAAGGCAACCCAGUUGGUUUUGGGUU-UUGUUCGGCUCGAACCAAAAA--------GAAAACAAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUCG .....((((((((((......)))))))-.......(((((.........--------.......(((.....)))..(((.....)))...)))))))). ( -24.60) >consensus ACAAAGGCAGCCCAGUUGGU_UUGGGUU_UUGUUCGGCUCGAAA__AAAA_________AAAACAAACAAAAAGUUGAGGCAUUCUGCCAGACGAGCGUCG .....((((((((((......)))))))........(((((........................(((.....)))..(((.....)))...)))))))). (-19.18 = -19.70 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:56 2006