Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,676,699 – 5,676,804 |
Length | 105 |
Max. P | 0.906011 |
Location | 5,676,699 – 5,676,804 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.65 |
Mean single sequence MFE | -27.85 |
Consensus MFE | -19.67 |
Energy contribution | -19.45 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.71 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5676699 105 + 27905053 GGC---------------ACAUACGAAUAAAUCGAGAAUAUUGCGCAUAAAUGUAUUUAAAAUUACGCAUUGCUCAUACGCAGCGUAUGGCAAUAUUUCCGCUUGACGGCGCCUUUUGUG (((---------------...............(..(((((((((((....((((........))))...))).((((((...))))))))))))))..)(((....))))))....... ( -27.00) >DroVir_CAF1 19828 105 + 1 AGC---------------GCAAUGAUAUAAAUCGACAAUAUUGCGCAUAAAUGUGUUUAAAAUUACGCAUUGCUCAUACGCAGCGUAUGGCAAUAUUUCCGCUUCAUGGCACAUUAUAUG .((---------------((((((..............))))))))...((((((((...........(((((.((((((...))))))))))).............))))))))..... ( -26.29) >DroPse_CAF1 10555 101 + 1 -------------------ACAAUAAAUAAAUCGAGAAUAUUGCGCAUAAAUGUAUUUAAAAUUACGCAUUGCUCAUACGCAACGUAUGGCAAUAUUUCCGCUCGACGGCGUCUUUUGUG -------------------((((........((((((((((((((((....((((........))))...))).((((((...))))))))))))))....))))).........)))). ( -23.03) >DroGri_CAF1 30166 103 + 1 AGC---------------GCGAUGAAGUAAAUCGACAAUAUUGCGCACAAAUGUGUUUAAAAUUACGCAUUGCUCAUACGCAGCGUAUGGCAAUAUUUCCGCUUGAUCGCAUUUUUG--U ...---------------(((((.((((.....((.(((((((((((...((((((........))))))))).((((((...)))))))))))))))).)))).))))).......--. ( -32.00) >DroWil_CAF1 26352 104 + 1 G-A---------------AUCGGCAAAUAAAUCGAGAAUAUUGCGCAUAAAUGUAUUUAAAAUUACGCAUUGCUCAUACGCAGCGUAUGGCAAUAUUUCCGCUUCAUAGGGUUUUAUAUA (-(---------------(.(((............((((((((((((....((((........))))...))).((((((...)))))))))))))))))).)))............... ( -22.00) >DroPer_CAF1 6707 120 + 1 GGCCGAAAGGGUGGCUGGAGAGACAAAUAAAUCGAGAAUAUUGCGCAUAAAUGUAUUUAAAAUUACGCAUUGCUCAUACGCAACGUAUGGCAAUAUUUCCGCUCGACGGCGCCUUUUGUG .....((((((((.(((..(((..........((..(((((((((((....((((........))))...))).((((((...))))))))))))))..)))))..)))))))))))... ( -36.80) >consensus GGC_______________ACAAACAAAUAAAUCGAGAAUAUUGCGCAUAAAUGUAUUUAAAAUUACGCAUUGCUCAUACGCAGCGUAUGGCAAUAUUUCCGCUUGACGGCGCCUUUUGUG ................................((..(((((((((((....((((........))))...))).((((((...))))))))))))))..))................... (-19.67 = -19.45 + -0.22)
Location | 5,676,699 – 5,676,804 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.65 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -20.64 |
Energy contribution | -20.50 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.76 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.906011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5676699 105 - 27905053 CACAAAAGGCGCCGUCAAGCGGAAAUAUUGCCAUACGCUGCGUAUGAGCAAUGCGUAAUUUUAAAUACAUUUAUGCGCAAUAUUCUCGAUUUAUUCGUAUGU---------------GCC .......(((((((.....((..((((((((((((((...))))))......((((((............))))))))))))))..)).......))...))---------------))) ( -28.20) >DroVir_CAF1 19828 105 - 1 CAUAUAAUGUGCCAUGAAGCGGAAAUAUUGCCAUACGCUGCGUAUGAGCAAUGCGUAAUUUUAAACACAUUUAUGCGCAAUAUUGUCGAUUUAUAUCAUUGC---------------GCU ........((((.((((..((..((((((((((((((...))))))......((((((............))))))))))))))..)).......)))).))---------------)). ( -27.40) >DroPse_CAF1 10555 101 - 1 CACAAAAGACGCCGUCGAGCGGAAAUAUUGCCAUACGUUGCGUAUGAGCAAUGCGUAAUUUUAAAUACAUUUAUGCGCAAUAUUCUCGAUUUAUUUAUUGU------------------- .((((.(((....((((((....((((((((((((((((((......)))))).(((........)))...)))).))))))))))))))...))).))))------------------- ( -25.20) >DroGri_CAF1 30166 103 - 1 A--CAAAAAUGCGAUCAAGCGGAAAUAUUGCCAUACGCUGCGUAUGAGCAAUGCGUAAUUUUAAACACAUUUGUGCGCAAUAUUGUCGAUUUACUUCAUCGC---------------GCU .--.......(((((.(((((..((((((((..((((((((......)))..)))))........(((....))).))))))))..)).....))).)))))---------------... ( -28.20) >DroWil_CAF1 26352 104 - 1 UAUAUAAAACCCUAUGAAGCGGAAAUAUUGCCAUACGCUGCGUAUGAGCAAUGCGUAAUUUUAAAUACAUUUAUGCGCAAUAUUCUCGAUUUAUUUGCCGAU---------------U-C .............(((((.((..((((((((((((((...))))))......((((((............))))))))))))))..)).)))))........---------------.-. ( -23.10) >DroPer_CAF1 6707 120 - 1 CACAAAAGGCGCCGUCGAGCGGAAAUAUUGCCAUACGUUGCGUAUGAGCAAUGCGUAAUUUUAAAUACAUUUAUGCGCAAUAUUCUCGAUUUAUUUGUCUCUCCAGCCACCCUUUCGGCC ......(((((..((((((....((((((((((((((((((......)))))).(((........)))...)))).)))))))))))))).....))))).....(((........))). ( -30.00) >consensus CACAAAAGACGCCAUCAAGCGGAAAUAUUGCCAUACGCUGCGUAUGAGCAAUGCGUAAUUUUAAAUACAUUUAUGCGCAAUAUUCUCGAUUUAUUUGUUUGU_______________GCC ...................((..((((((((((((((...))))))......((((((............))))))))))))))..))................................ (-20.64 = -20.50 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006