Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 861,352 – 861,472 |
Length | 120 |
Max. P | 0.693505 |
Location | 861,352 – 861,472 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -34.75 |
Consensus MFE | -33.24 |
Energy contribution | -33.73 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.96 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 861352 120 + 27905053 UCCCCUCUCAUUAUUUAAACAAAACGGCGUCAUAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU .((((((......(((....)))..((((.(((.((((((((((((((........((((...)))).......)))))))))).....))))..))).))))))))))........... ( -37.36) >DroSec_CAF1 36129 120 + 1 UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU .((((((......(((....)))..((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).))))))))))........... ( -36.16) >DroSim_CAF1 35309 120 + 1 UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGAGUCAGGAUGAUU (((...(((....(((....))).(((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).)))))..)))...)))..... ( -32.26) >DroEre_CAF1 36000 120 + 1 UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAAUGGCCCCCACAAUCCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU .((((((......(((....)))..((((.((..(((((((((((((.....(((...)))....((......))))))))))).....))))...)).))))))))))........... ( -33.20) >consensus UCCCCUCUCAUUAUUUAAACAAAACGGCGUCACAGUGCAGAGCAAACAAUUCGCCAGUGGCCCCCACAAACCAGUGUUUGCUUUUUAAAGCGCCAAUGCCGCCGAGGGGUCAGGAUGAUU .((((((......(((....)))..((((.((..((((((((((((((........((((...)))).......)))))))))).....))))...)).))))))))))........... (-33.24 = -33.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:11 2006