Locus 20

Sequence ID 3R_DroMel_CAF1
Location 190,266 – 190,360
Length 94
Max. P 0.830993
window35

overview

Window 5

Location 190,266 – 190,360
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -27.04
Consensus MFE -24.23
Energy contribution -23.65
Covariance contribution -0.58
Combinations/Pair 1.35
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.71
SVM RNA-class probability 0.830993
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 190266 94 + 27905053
CUGAUAUCCU-----UUUU-UUUUUAGUUUGAGUCCGUCGUGAUGCUCCUCUGCUACGUAGGAUACUGCGUGGCCCUCCAUUUCAAUACGGAGCUGGAAC
..........-----....-......((((.(((((((..(((.........(((((((((....)))))))))........)))..))))).)).)))) ( -28.03)
>DroPse_CAF1 26984 96 + 1
CUAAUCUUCG--AC--UUUCUCCACAGUUCGAGUCCGUGGUGAUGCUGCUCUGCUAUGUGGGAUACUGCGUGGCCCUCCACUUCAACACGGAGCUGGAGC
..........--..--..........((((.((((((((.(((.(.((....((((((..(....)..))))))....))).))).)))))).)).)))) ( -30.60)
>DroGri_CAF1 24479 99 + 1
UUAAUAUCUU-UUGUUUCCAAUUAUAGGCUGAAUCUGUGGUGAUGUUGCUGUGUUAUGUGGGCUACUGCAUUGCCUUGCAUUUCAAUACGGAACUGGAGC
..........-....(((((((((((((.....))))))))...(((.(((((((((((((((.........))).)))))...))))))))))))))). ( -22.00)
>DroEre_CAF1 26491 100 + 1
CUAAUCUUUCCUUCUUUCUUCUUUCAGUUUGAGUCCGUCGUGAUGCUGCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUUAAUACGGAGCUGGAAC
.....................(((((((.....(((((..(((.(.((....(((((((((....)))))))))....))).)))..)))))))))))). ( -26.50)
>DroYak_CAF1 25373 100 + 1
CUAAUCUCUCUUUCUUUCUUCUUUCAGUUUGAGUCCGUCGUCAUGCUCCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUUAAUACGGAGCUGGAAC
.....................(((((((.....(((((..............(((((((((....))))))))).............)))))))))))). ( -24.53)
>DroPer_CAF1 25172 96 + 1
CUAAUCUUCG--AC--UUUCUCCCCAGUUCGAGUCCGUGGUGAUGCUGCUCUGCUAUGUGGGAUACUGCGUGGCCCUCCACUUCAACACGGAGCUGGAGC
..........--..--..........((((.((((((((.(((.(.((....((((((..(....)..))))))....))).))).)))))).)).)))) ( -30.60)
>consensus
CUAAUCUCCC__UC_UUCUCUUUUCAGUUUGAGUCCGUCGUGAUGCUGCUCUGCUACGUAGGAUACUGCGUGGCCCUCCACUUCAAUACGGAGCUGGAAC
..........................((((.(((((((..(((.........(((((((((....)))))))))........)))..))))).)).)))) (-24.23 = -23.65 +  -0.58) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:23 2006