Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,658,941 – 5,659,047 |
Length | 106 |
Max. P | 0.535308 |
Location | 5,658,941 – 5,659,047 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 87.98 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -15.66 |
Energy contribution | -15.22 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.47 |
Structure conservation index | 0.72 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5658941 106 + 27905053 AAAGUGCAUUGGAAAACAUUUGCGUAUAUAUGUAUGUAUGUUUGUUUGCAUAUUGGGUAUUUAAAUUUUUUAACAUCCUCUAUAUGCCUGGGCACGUUUCUUCGUU ...((((.(..(.(((((...((((((((....)))))))).)))))((((((.(((...((((.....))))...)))..)))))))..)))))........... ( -25.30) >DroSec_CAF1 12596 106 + 1 AAAGUGCAUUGGAAAACAUUUGCGUAUAUAUAUAUGUAUUUAUGUAUGCAUAUUGGGUAUUUAAAUUUUUUAACAUCCUCUAUAUGCCUGGGCACGUUUCUCCGUU ...((((.(..(...((((.(((((((....)))))))...))))..((((((.(((...((((.....))))...)))..)))))))..)))))........... ( -23.20) >DroEre_CAF1 9559 94 + 1 AAAGUGCAUUGGAAAACAUUUGCGUAUAUCUGUAUGU------------ACAUUGGGUAUUUAAAUUUUUUAACAUCCUUUAUAUGCCCGGGCACGUUUCUCCGUU ..........(((((((...(((((((((....))))------------)).((((((((.((((.............)))).))))))))))).)))).)))... ( -19.92) >DroYak_CAF1 12861 94 + 1 AAAGUGCAUUGGAAAACAUUUGCGUAUAUCUGUAUGU------------ACAUUGGGUAUUUAAAUUUUUGAACAUCCUCUAUAUGCCCGGGCACGUUUCUCCGUU ...((((.((((........(((((((....))))))------------)....((((.(((((....))))).)))).........))))))))........... ( -18.50) >consensus AAAGUGCAUUGGAAAACAUUUGCGUAUAUAUGUAUGU____________ACAUUGGGUAUUUAAAUUUUUUAACAUCCUCUAUAUGCCCGGGCACGUUUCUCCGUU ...((((..............((((((....))))))...............((((((((.......................))))))))))))........... (-15.66 = -15.22 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:46 2006