| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,651,221 – 5,651,350 |
| Length | 129 |
| Max. P | 0.923807 |
| Location | 5,651,221 – 5,651,334 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.15 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.86 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5651221 113 - 27905053 GUUUAUAACUCCGAAAGUUUUGGAGCAAACAAAGCAAAUGCACCAACUUCUUUUGCUGCACAUCCAAGACUCCUUUUU-CGCAAUAUAAAAUAUUUCAACAGAGAAUUUGCAGU------ .((((((....(((((((((((((((.......))...((((.(((......))).))))..))))))))).....))-))...))))))...((((....)))).........------ ( -20.50) >DroSec_CAF1 4944 113 - 1 UUUUAUAACUCCGAAAGUUUUGGGGGAAACAAAGCAAAUGCAGCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU-CGCAAUUUCAAAUUUUUCAACAGAGAAUUUGCAGU------ ...........((((((((((((((....).......(((((((((......))))))))).))))))))).....))-))..(((.(((((((((.....))))))))).)))------ ( -29.80) >DroSim_CAF1 4937 113 - 1 UUUUAUAACUCCGAAAGUUUUGGGGGAAACAAAGCAAAUGCAGCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU-CGCAAUUUCAAAUAUUUCAACAGAGAAUUUGCAGU------ ............(((((((((((((....).......(((((((((......))))))))).))))))))).....))-)((((.(((...............))).))))...------ ( -29.36) >DroEre_CAF1 2607 119 - 1 UAUUAUUACUCCGAAAGUCUCGG-GGAAACUAUUCAAAUGCGCCAAUCUUUUUUACUGCAUAUCCUAGACUUCGUUUUCUGCAAUUUAAAAUAAUUCAGCAGAGAAUUCGCAGUUACUUU .......(((.(((((((((.((-(....).......(((((..((......))..)))))..)).)))))).(((((((((((((......))))..)))))))))))).)))...... ( -25.00) >DroYak_CAF1 5088 119 - 1 UAUUAUUACUCCGAAAGUCUCAG-CGAAACUGUUCAAAGGCAUUAACCUUUUUUACUGCAUAUUUAAAACUUCUUUUUGCGCAAUUUAAAAUGUUUCAGCAGAGAAUUUGCAGUUACUUU .......(((.((((..((((.(-((((((.((..(((((......)))))...)).(((.................)))............))))).)).)))).)))).)))...... ( -18.83) >consensus UUUUAUAACUCCGAAAGUUUUGG_GGAAACAAAGCAAAUGCACCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU_CGCAAUUUAAAAUAUUUCAACAGAGAAUUUGCAGU______ .......(((.((((((((((((((....).......(((((.(((......))).))))).)))))))))......................((((....)))).)))).)))...... (-13.10 = -13.86 + 0.76)
| Location | 5,651,255 – 5,651,350 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 78.45 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -9.84 |
| Energy contribution | -10.56 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5651255 95 - 27905053 AAAGUAUGCAAGCAUAGUUUAUAACUCCGAAAGUUUUGGAGCAAACAAAGCAAAUGCACCAACUUCUUUUGCUGCACAUCCAAGACUCCUUUUU-C (((.((((....)))).)))...........(((((((((((.......))...((((.(((......))).))))..))))))))).......-. ( -20.00) >DroSec_CAF1 4978 95 - 1 AAAGUAUGCAAGAAUAUUUUAUAACUCCGAAAGUUUUGGGGGAAACAAAGCAAAUGCAGCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU-C (((((((......)))))))...........((((((((((....).......(((((((((......))))))))).))))))))).......-. ( -26.30) >DroSim_CAF1 4971 95 - 1 AAAGUAUGCAAGAAUAUUUUAUAACUCCGAAAGUUUUGGGGGAAACAAAGCAAAUGCAGCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU-C (((((((......)))))))...........((((((((((....).......(((((((((......))))))))).))))))))).......-. ( -26.30) >DroEre_CAF1 2647 84 - 1 -----------GAAUAUAUUAUUACUCCGAAAGUCUCGG-GGAAACUAUUCAAAUGCGCCAAUCUUUUUUACUGCAUAUCCUAGACUUCGUUUUCU -----------................((((.((((.((-(....).......(((((..((......))..)))))..)).))))))))...... ( -14.20) >DroYak_CAF1 5128 95 - 1 AAAGUAUGUAAGAAUAUAUUAUUACUCCGAAAGUCUCAG-CGAAACUGUUCAAAGGCAUUAACCUUUUUUACUGCAUAUUUAAAACUUCUUUUUGC .(((((((((.(((((...........(....)......-......)))))(((((......))))).....)))))))))............... ( -12.60) >consensus AAAGUAUGCAAGAAUAUUUUAUAACUCCGAAAGUUUUGG_GGAAACAAAGCAAAUGCACCAACCUCUUUUGCUGCAUAUCCAAGACUCCAUUUU_C ...............................((((((((((....).......(((((.(((......))).))))).)))))))))......... ( -9.84 = -10.56 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:43 2006