| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,650,562 – 5,650,667 |
| Length | 105 |
| Max. P | 0.953407 |
| Location | 5,650,562 – 5,650,667 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.74 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5650562 105 - 27905053 UCCUCGGGCUACGCGUUUGCUCAACAGGUAACUAGUAGCCAUUGGAAAAUCUUUCCCGUAUCUACAUACACUUGGGUAUAUAAAAUAUCUAAC--CUCAAGCGAAGG (((...((((((....(((((.....)))))...))))))...)))....(((((..((((....)))).(((((((..............))--).)))).))))) ( -25.24) >DroSec_CAF1 4271 93 - 1 UCC-CGGGCUACGCGUUUCCUCAACAGGUAACUAGUAGCCAGUGGAAA-----CCUCGUA------UACACUUGGAUACAUCAAAUAUCUAAC--CUUAAGCUAAAG (((-(.((((((..(((.(((....))).)))..)))))).).)))..-----....((.------((...(((((((.......))))))).--..)).))..... ( -21.20) >DroSim_CAF1 4261 104 - 1 UCCGCGGGCUACGCGUUUCCUCAACAGGUAACUAGUAGCCAUUGGAAAAUCUUCCUCGUAUCUACAUACACUUGGAUACAUCAAAUAUCCAAU--CUUAAGCUAAA- ...((.((((((..(((.(((....))).)))..))))))((((((...........(((((((........)))))))........))))))--.....))....- ( -25.81) >DroEre_CAF1 1939 88 - 1 UCCUCGGGCUAUGCGUUUCCUCAACAGGUAACUAGUAGCCAUGGUAAAAU-----------------GAACUGGGGUACAUCAAAUAUCUAGGAGCUCA--CUAAAG .((...((((((..(((.(((....))).)))..))))))..)).....(-----------------((.((.(((((.......)))))...)).)))--...... ( -18.20) >DroYak_CAF1 4401 101 - 1 UCCUCGGGCUAUGCGUUUCCUCAACAGGUAACUAGUAGCCAAGGGAAAGUCUUUCUAAUAUCUUCAAACACUGGGGUACUUCAAAUAUCGAGACACUC------UAG ((((..((((((..(((.(((....))).)))..))))))..))))........................(((((((..(((.......)))..))))------))) ( -26.40) >consensus UCCUCGGGCUACGCGUUUCCUCAACAGGUAACUAGUAGCCAUUGGAAAAUCUUCCUCGUAUCU_CAUACACUUGGGUACAUCAAAUAUCUAAC__CUCAAGCUAAAG (((...((((((..(((.(((....))).)))..))))))...))).........................(((((((.......)))))))............... (-17.66 = -17.82 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:41 2006