Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,625,743 – 5,625,863 |
Length | 120 |
Max. P | 0.677897 |
Location | 5,625,743 – 5,625,863 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.03 |
Mean single sequence MFE | -46.65 |
Consensus MFE | -39.19 |
Energy contribution | -39.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.84 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5625743 120 + 27905053 AGUUCCGAGAGUGGCGCAUAAAGUCAAUCGAGGGAUUACGUGAGUGCAACAUGGGAGCUGGGGGAUUGGCACCAUUGCCAGUGCUACCUGUGCGACCAAGGCGCAGAUCCCAUGAUGAAU ((((((..((.((((.......)))).))..))))))((....)).((.(((((((.....((.(((((((....))))))).))..((((((.......)))))).))))))).))... ( -46.70) >DroSim_CAF1 91 120 + 1 AGUUCCGCGAGUGGCGCAUAAAGUCCAUCGAGGGAUUACGUGAGUGCAACAUGGGAGCUGGGGGAUUGGCACCAUUGCCAGUGCUACCUGUGCGACCAAGGCGCAGAUCCCAUGAUGAAU ((((((.(((.(((.((.....)))))))).))))))((....)).((.(((((((.....((.(((((((....))))))).))..((((((.......)))))).))))))).))... ( -46.60) >DroEre_CAF1 481 120 + 1 AGUUGCGCGAGUGCCGCAUGAAGUCCAUCGAGGGAUUGCGUGAGUGCAGCAUGGGAGCUGGAGGAUUGGAACCAUUGCCAGUGCUGCCUGUGCGACCCAGGCGCAGAUCCCAUGAUGAAU .(((((((........((((.(((((......))))).)))).)))))))((((((.(((.((.(((((........))))).))(((((.......))))).))).))))))....... ( -45.90) >DroYak_CAF1 91 120 + 1 AGUUGCGCGAGUGCCGCAUAAAGUCCAUCGAGGGAUUGCGUGAGUGCAGCAUGGGAGCUGGAGGGUUGGCACCAUUGCCAGUGCUGCCUGUGCGACCCAGGCGCAGAUCCCAUGAUGAAU .(((((((.....(((((....((((......)))))))).).)))))))((((((.(((.((.(((((((....))))))).))(((((.......))))).))).))))))....... ( -47.40) >consensus AGUUCCGCGAGUGCCGCAUAAAGUCCAUCGAGGGAUUACGUGAGUGCAACAUGGGAGCUGGAGGAUUGGCACCAUUGCCAGUGCUACCUGUGCGACCAAGGCGCAGAUCCCAUGAUGAAU .((.(((....))).))........(((((.((((((......((((....(((..((.((((.(((((((....))))))).)).))...))..)))..)))).)))))).)))))... (-39.19 = -39.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:27 2006