Locus 1989

Sequence ID 3R_DroMel_CAF1
Location 5,620,959 – 5,621,064
Length 105
Max. P 0.723413
window3250

overview

Window 0

Location 5,620,959 – 5,621,064
Length 105
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.28
Mean single sequence MFE -34.72
Consensus MFE -17.84
Energy contribution -18.48
Covariance contribution 0.64
Combinations/Pair 1.29
Mean z-score -1.94
Structure conservation index 0.51
SVM decision value 0.41
SVM RNA-class probability 0.723413
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5620959 105 + 27905053
UCUGUCUGCAAUUUGGGUUCACCCAAACCUGAGAAACGUCAGGCGAAUUCACCACUACCACCGACGCCCAAGGCAAUUGUGGGCCAGGCGCACCAUCUGCAGGCC---
...(((((((.((((((....))))))...((....((((.((((....).......((((....(((...)))....))))))).)))).....))))))))).--- ( -34.20)
>DroEre_CAF1 3726 105 + 1
UCUGUCUGCAAUUUGGGGUCACCCAAACCGGAGAAGCGCCAGGCGAAUUCGCCACUACCACCCACGCCCAAGGCAAGUGCAGGCCAGUCGCAUCAUUUGCAGGCC---
...((((((((((((((....)))))).....((.(((.(.((((....))))............(((....((....)).)))..).))).))..)))))))).--- ( -37.30)
>DroWil_CAF1 3756 108 + 1
UCCGUUUGUAAUUUGGGCUCACCGAAACCGGAAAAGCGCCAGGCAAAUUCACCACUACCACCGACGCCCAAAUCCAGUAUUGUCCAACCACACCAUCUGCAUGCCACU
...((.((((((((((((((.(((....)))....((.....))..................)).)))))))).......(((......))).....)))).)).... ( -20.00)
>DroYak_CAF1 3703 105 + 1
UCUGUCUGCAACUUGGGUUCACCCAAACCUGAGAAGCGUCAGGCGAAUUCGCCACUACCACCGACGCCCAAGGCAAGUGUGGGACAGUCGCACCAUCUGCAGGCC---
...(((((((.((..((((......))))..))..(((.(.((((....))))....(((((...(((...)))..).))))....).)))......))))))).--- ( -40.60)
>DroAna_CAF1 4025 102 + 1
UCCGUGUGCAACCUCGGCUCUCCAAAGCCGGAAAAGCGGCAGGCGAAUUCGCCUCUGCCUCCGACACCAAAAUCAAGU---GGCCAAGCCCACCAUCUGCACGCG---
..((((((((...((((((......))))(((...((((.(((((....))))))))).)))))............((---((......))))....))))))))--- ( -39.10)
>DroPer_CAF1 7638 93 + 1
UCUGUGUGUAAUCUGGGCUCGCCCAAGCCGGAGAAGCGGCAGGCGAACUCGCCGCUGCCACCGACGCCCAAGUCAAGUGC------------CCAUCUGCAUGCG---
...(((((((...(((((.(.........((....(((((.((((....)))))))))..))(((......)))..).))------------)))..))))))).--- ( -37.10)
>consensus
UCUGUCUGCAAUUUGGGCUCACCCAAACCGGAGAAGCGCCAGGCGAAUUCGCCACUACCACCGACGCCCAAGGCAAGUGU_GGCCAGGCGCACCAUCUGCAGGCC___
...(((((((.((((((....))))))..............((((....))))............................................))))))).... (-17.84 = -18.48 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:26 2006