Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,619,067 – 5,619,162 |
Length | 95 |
Max. P | 0.898756 |
Location | 5,619,067 – 5,619,162 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.14 |
Mean single sequence MFE | -21.07 |
Consensus MFE | -9.03 |
Energy contribution | -8.87 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.44 |
Mean z-score | -2.28 |
Structure conservation index | 0.43 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5619067 95 + 27905053 CAAGAA-----AAUAUUAGCUAA-----GCGAAAAGUUUAAAAAGUUAAUAUA----UAUAUGUGCAGCGGUCGGUG--CCAGCGCUUUAUGGGUACAUAGUGCAUAUGUA ......-----.(((((((((((-----((.....))))....)))))))))(----((((((..(((((.(.(...--.)).)))).((((....)))))..))))))). ( -24.20) >DroPse_CAF1 5425 93 + 1 CAAGAAGAAAAAGUCUUAACGUA-----ACAAAAAGUAU-------UAGCAU------UGAUGUAUAGUAAAUAGUGGAAAAGUGUUUAAUGGGUACAUAGUGCAUAUGUA ....((((.....)))).(((((-----((.....))..-------..((((------((.(((((..((((((.(.....).))))))....))))))))))).))))). ( -16.60) >DroSim_CAF1 1781 99 + 1 CAAGAA-----AAUAUUAGCUAA-----GCGAAAAGUUUAAAAAGUUAAUAUAUAUAUAUAUGUGCAGCGGUCGGUG--CAAGUGCUUUAUGGGUACAUAGUGCAUAUGUA ......-----.(((((((((((-----((.....))))....)))))))))...((((((((..(.(((.....))--)..(((((.....)))))...)..)))))))) ( -24.80) >DroEre_CAF1 1808 89 + 1 CAAGAA-----AAUAUUAGCUAA-----GCGAAAAGUU------GUUAAAAUA----UAUAUGUGCAGCGGUCGGUG--CAAGUGCUUUAUGGGUACAUAGUGCAUAUGUA ......-----....(((((..(-----((.....)))------)))))..((----((((((..(.(((.....))--)..(((((.....)))))...)..)))))))) ( -19.70) >DroYak_CAF1 1803 89 + 1 CAAGAA-----AAUAUUAGCUAA-----GCGAAAAGUU------GUUAACAUA----UAUAUGUGCAGCGGUCGAUG--CAAGUGCUUUAUGGGUACAUAGUGCAUAUGUA ......-----............-----.(((...(((------((..((((.----...)))))))))..))).((--((.((((.(((((....))))).)))).)))) ( -20.90) >DroAna_CAF1 2220 91 + 1 AAAUAA-----AAUAAUAGCUUAGCUCUGCGAAAAAUAU-------U-AAAUA----CAUAAGUACAGCAGCCAGUG--CUGGUGCU-AAUGGGUACAUAGUGCGUAUGUA ......-----.......((........)).........-------.-...((----((((.((((..((((....)--)))(((((-....)))))...)))).)))))) ( -20.20) >consensus CAAGAA_____AAUAUUAGCUAA_____GCGAAAAGUUU_____GUUAAAAUA____UAUAUGUGCAGCGGUCGGUG__CAAGUGCUUUAUGGGUACAUAGUGCAUAUGUA .........................................................(((((((((((((.(.........).)))).((((....))))))))))))).. ( -9.03 = -8.87 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:24 2006