Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,618,699 – 5,618,791 |
Length | 92 |
Max. P | 0.670607 |
Location | 5,618,699 – 5,618,791 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.98 |
Mean single sequence MFE | -17.18 |
Consensus MFE | -13.57 |
Energy contribution | -13.55 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.20 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5618699 92 + 27905053 UAAAUUAGAUUUAAUUGCAACUGUUUGUGUAACGCACAAAAAUAUUCAUUCUUGCUGCUAUUCAGCAUAGA------UAUAAUUUUGAUACCAAAUAU ...((((((.(((..........((((((.....)))))).........((((((((.....))))).)))------..))).))))))......... ( -14.60) >DroPse_CAF1 1397 91 + 1 UAAAUUAGAUUUAAGAACGACCUAUUGUGUCAAGCACAAAUG-------UUAAGCUGUUGCUUAGCAUAGAAAUAAGUAUAGUUUUGAGACCAAAUAU .((((((.(((((...........(((((.....)))))(((-------((((((....))))))))).....))))).))))))............. ( -18.80) >DroSec_CAF1 1409 92 + 1 UAAAUUAGAUUUAAUUGCAAAUGUUUGUGUAACGCACAAAUAUAUUCACUCUUGCUGCUAUUCAGCAUAGA------UAUAAUUUUGAUACCAAAUAU ...((((((.(((.......(((((((((.....)))))))))......((((((((.....))))).)))------..))).))))))......... ( -18.00) >DroSim_CAF1 1409 92 + 1 UAAAUUAGAUUUAAUUGCAAAUGUUUGUGUAACGCACAAAUAUAUUCAUUCUUGCUGCUAUUCAGCAUAGA------UAUAAUUUUGAUACCAAAUAU ...((((((.(((.......(((((((((.....)))))))))......((((((((.....))))).)))------..))).))))))......... ( -18.10) >DroEre_CAF1 1408 88 + 1 UAAAUUAGAUUUAAGAGCAACUGUUUGUGUAAGGCACAAAUA----CCUUCUGGCUGCUAUUCAGCUUAGA------UAUAAUUUUGAUACCAAAUAU .((((((.(((((((((((..((((((((.....))))))))----((....)).))))......))))))------).))))))............. ( -16.90) >DroYak_CAF1 1335 88 + 1 UAAAUUAGAUUUAAGUGCAACUGUUUGUGUAAGGCACAAAUA----CAUUCUGGCUGCUAUUCAGCUUAGA------UAUAAUUUUGAUACCAAAUAU ...((((((.(((........((((((((.....))))))))----...((((((((.....)))).))))------..))).))))))......... ( -16.70) >consensus UAAAUUAGAUUUAAGUGCAACUGUUUGUGUAACGCACAAAUA____CAUUCUUGCUGCUAUUCAGCAUAGA______UAUAAUUUUGAUACCAAAUAU ...((((((.(((........((((((((.....)))))))).......((((((((.....))))).)))........))).))))))......... (-13.57 = -13.55 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:23 2006