Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,616,727 – 5,616,823 |
Length | 96 |
Max. P | 0.959590 |
Location | 5,616,727 – 5,616,823 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.88 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -29.63 |
Energy contribution | -30.30 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.33 |
Mean z-score | -2.74 |
Structure conservation index | 0.85 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5616727 96 - 27905053 AAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGGGUAUGCUGUCAGAGCGGCAACGAUGAGUCCUGGCUGA ...(((((((((((..((((((((((((.....))))))))).)))..))))...((..((.((((((....))))))))..)).))))))).... ( -37.60) >DroSec_CAF1 391 96 - 1 AAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACACGGUAUGCUGUCAGAGUGGCAGCGAUGAGUCCUGGCUGA ...(((((((((((..((((((((((((.....))))))))).)))..))))..........(((((((.....)))))))....))))))).... ( -38.80) >DroSim_CAF1 455 96 - 1 AAACCAGGGCAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGGGUAUGCUGUCAGAGUGGCAGCGAUGAGUCCUGGCUGA ...(((((((((((..((((((((((((.....))))))))).)))..))))))........(((((((.....)))))))......))))).... ( -40.40) >DroEre_CAF1 686 96 - 1 AAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUUCUGUUGGCUCUGCACAGCGUGUGCUGCCAGAGCGGCAGCGAGGAGUCCUGGAUGG ...(((((((......((((((((((((.....)))).))))))))..(((.((((...))))((((((.....)))))))))..))))))).... ( -41.80) >DroYak_CAF1 669 96 - 1 AAACAAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUUCUGUUGGUAUUGCACAGUGUGUGCUGUCAGAGCGGCAGCGAGGAGUCCUGGGUGG ..((.(((((((((..((((((((((((.....)))).))))))))..))))((((...))))((((((.....)))))).....)))))..)).. ( -32.30) >DroPer_CAF1 499 96 - 1 AAAAAAGAGCAAUGAAAACAGGCACAAUAAUCAGUUGUUGCUUAUUGAUAUUUAAUAAUGUGUGCUGCCAGAGUGGUAGUGAACAAAAACCGAUAG ...(((...(((((......((((((((.....)))).)))))))))...))).....(((.(((((((.....))))))).)))........... ( -17.30) >consensus AAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGGGUAUGCUGUCAGAGCGGCAGCGAUGAGUCCUGGCUGA ...(((((((((((..((((((((((((.....))))))))).)))..))))..........(((((((.....)))))))....))))))).... (-29.63 = -30.30 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:22 2006