Locus 1984

Sequence ID 3R_DroMel_CAF1
Location 5,615,526 – 5,615,635
Length 109
Max. P 0.961513
window3245

overview

Window 5

Location 5,615,526 – 5,615,635
Length 109
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 71.63
Mean single sequence MFE -21.63
Consensus MFE -9.15
Energy contribution -10.90
Covariance contribution 1.75
Combinations/Pair 1.33
Mean z-score -2.25
Structure conservation index 0.42
SVM decision value 1.53
SVM RNA-class probability 0.961513
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5615526 109 - 27905053
ACUUACCACUUAAUUACCAUA-----UU-----UACCCAUAGCCGGAUUAUCCUUCCCGUAUAACCUCCUUGCACCAGUCCUUUUGGUGUUUUUAGUGGGUUACACCAUAAAGCUGUGC
.....................-----..-----....((((((.(((.......))).((.(((((..((.(((((((.....)))))))....))..))))).))......)))))). ( -27.10)
>DroSec_CAF1 12726 103 - 1
ACUU------CAAUAACCAUA-----UU-----UACCCAUAGCCGGAUUAUCCUUCCCGUAUAACCUCCUUGCACCAGUCCUUUUGGUGUUUUUAGUGGGUUACAUCAUAAAGCUGUCC
....------...........-----..-----.....(((((.(((.......)))....(((((..((.(((((((.....)))))))....))..))))).........))))).. ( -22.90)
>DroEre_CAF1 11970 103 - 1
ACUU------CAAUAACCAUA-----UU-----UACCCAUAGCCGGAUUAUCCUUCCCUUAUAACCUCCUUGCACCAGUCCUUUUGGUGUGUUUAGUUGGGUACAUUAUAAAGCUGUCC
....------...........-----..-----((((((.(((.(((.......)))..............(((((((.....))))))))))....))))))................ ( -19.10)
>DroYak_CAF1 12059 106 - 1
AUUU------CAAUAACCAUA--UUAUU-----UACCCAUAGCCGGAUUAUCCUUCCCUUAUAACCUCCUUGCACCAGUCCUUCUGCUGUGUUUAGUGGGGUACAUUAUAAAGCUGUCC
....------...........--.....-----.....(((((.(((.......)))......(((((((.((((.(((......)))))))..)).)))))..........))))).. ( -19.00)
>DroMoj_CAF1 14719 107 - 1
AUUUAUUA--UAAUUGCUUUC-----UU-----UACCCGCAGCGGAAUUAUCAUUUCCAUUCAACUUAAUAGCUCCUUUCGGACUUAUAGCUCUGAUUGGGUACAUAAUUAAAUUAAUC
........--(((((......-----..-----((((((.(((((((.......))))..........((((.(((....))).)))).))).....))))))........)))))... ( -17.49)
>DroPer_CAF1 11353 112 - 1
-CCU------GGAUAACCACCAUUUAUUUAUUGUACCCACAGCUGGAUUAUCUUUCCCCUACAACCUUAUUGCUCCCAUAUUUUUGGUAGCUUUGGUGGGGUACAUUAUCAAGUUAACA
-..(------((....))).........((.(((((((......(((.......)))......(((.....(((.(((......))).)))...))).))))))).))........... ( -24.20)
>consensus
ACUU______CAAUAACCAUA_____UU_____UACCCAUAGCCGGAUUAUCCUUCCCGUAUAACCUCCUUGCACCAGUCCUUUUGGUGUCUUUAGUGGGGUACAUUAUAAAGCUGUCC
...................................(((((....(((.......)))..............(((((((.....))))))).....)))))................... ( -9.15 = -10.90 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:21 2006