Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,614,053 – 5,614,148 |
Length | 95 |
Max. P | 0.744607 |
Location | 5,614,053 – 5,614,148 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.54 |
Mean single sequence MFE | -24.51 |
Consensus MFE | -24.02 |
Energy contribution | -23.84 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.98 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5614053 95 + 27905053 CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUAAAAGUAGAACA .......((((........(((((.....)))))..(((((.......((((((((.(....).)))))))))))))..........)))).... ( -25.11) >DroSec_CAF1 11252 95 + 1 CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUAAAAGUAUAACA ..(((...(((........(((((.....)))))..(((((.......((((((((.(....).)))))))))))))..........)))..))) ( -25.01) >DroEre_CAF1 10516 93 + 1 CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUA--AGUAGAACA .......((((........(((((.....)))))..(((((.......((((((((.(....).))))))))))))).......--.)))).... ( -25.11) >DroYak_CAF1 10584 93 + 1 CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUUCAGCAGUGCCGGACAAAUA--AGUAGAACA .......((((........(((((.....)))))..(((((.......((((((((........))))))))))))).......--.)))).... ( -22.81) >consensus CAUGUAAUUACAUUAAUUAUGAUGUUGCUCAUCAAACUGGUAACUUUGGCUGCUGGUCCGCCGUCCAGCAGUGCCGGACAAAUA__AGUAGAACA ..(((...(((........(((((.....)))))..(((((.......((((((((........)))))))))))))..........)))..))) (-24.02 = -23.84 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:20 2006