Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,598,023 – 5,598,114 |
Length | 91 |
Max. P | 0.967558 |
Location | 5,598,023 – 5,598,114 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -17.47 |
Energy contribution | -19.03 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.24 |
Mean z-score | -2.43 |
Structure conservation index | 0.54 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5598023 91 - 27905053 CAGCACCGCCACCAAUGCCAGUUUUUGGCGCGGGAGGCGCUCCUCCUCCACCACCGCCUCCAUCAA------GUGGCAUGGCCGGCGUUCCACCACC ......((((.(((.(((((.((..(((.((((((((.......)))).....))))..)))..))------.))))))))..)))).......... ( -32.20) >DroPse_CAF1 3259 97 - 1 CGCCGCCACCCCCAAUGCCGGCUGCAACUACAUCUGGUGGUCCACCACCACCACCACCGCCGCCGAUGCCAGCUUUAACCGCGGGCGGACCUCCAAG ..(((((...........((((.((.........((((((....))))))........)).))))......((.......)).)))))......... ( -30.13) >DroSec_CAF1 3463 91 - 1 CACCGCCGCCACCAAUGCCAGUCUUAGGCGCGGGAGGCGUUCCUCCUCCACCACCGCCUCCACCAA------GUGGCAUGGCCGGCGUUCCCCAACC ...((((((((....(((((..(((.((....(((((((...............))))))).))))------))))))))).))))).......... ( -33.76) >DroSim_CAF1 3730 91 - 1 CACCGCCGCCACCAAUGCCAGUCUUAGGCGCGGGAGGCGUUCCUCCUCCACCACCGCCUCCACCAA------GUGGCAUGGCCGGCGUUCCACAACC ...((((((((....(((((..(((.((....(((((((...............))))))).))))------))))))))).))))).......... ( -33.76) >DroEre_CAF1 3374 88 - 1 CACCACCGCCUCCAAUGCCCGUUUUAGCUACGG---GCGCUCCACCUCCACCGCCACCUCCACCAG------GUGGCAUAGCCGGCGUUCCACCACC ......((((......((((((.......))))---))..............(((((((.....))------)))))......)))).......... ( -31.00) >DroYak_CAF1 3370 91 - 1 CACCACCGCCUCCAAUGCCAGUUUCAGGAGCGGGAGGUGCUCCUCCUCCACCGCCGCCUCCACCAA------GUGGAAUGGCCGGCGUUCCACCACC ..........................(((((((((((....)))))).....(((((((((((...------)))))..)).)))))))))...... ( -32.10) >consensus CACCACCGCCACCAAUGCCAGUUUUAGGCGCGGGAGGCGCUCCUCCUCCACCACCGCCUCCACCAA______GUGGCAUGGCCGGCGUUCCACCACC ......((((....((((((............(((((((...............)))))))............))))))....)))).......... (-17.47 = -19.03 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:17 2006