Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 859,281 – 859,401 |
Length | 120 |
Max. P | 0.835930 |
Location | 859,281 – 859,401 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -42.85 |
Consensus MFE | -31.17 |
Energy contribution | -31.43 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.73 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 859281 120 + 27905053 AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGGAAUAGGAUGUGAUGCAUGGGGCACUCAGGGGAGUGGGUUGUAUCAGCCCCGA .(((......)))...(.((((....((((((((((.....)))))))))).((((((....)))))).........(((((((.....(((((....)))))...))))))))))).). ( -42.30) >DroSec_CAF1 34080 118 + 1 AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG--AAGGGGAGGGCGUUGUACCAGCCCCGA .....(.(..((((.((((((.(...((((((((((.....)))))))))).))))).))))))..))..((((...((((((((.(..(.--.......)..).)))))))).)))).. ( -44.30) >DroSim_CAF1 33272 118 + 1 AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG--AAGGGGAGGGCGUUGUACCAGCCCCGA .....(.(..((((.((((((.(...((((((((((.....)))))))))).))))).))))))..))..((((...((((((((.(..(.--.......)..).)))))))).)))).. ( -44.30) >DroEre_CAF1 34325 103 + 1 AGAUAGCCAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGG------------GGAUGUGGGCAGGGGGGCG--AAGGGGACAAAGUUGU---AGCCCCGA .....(((..(((..((((((.(...((((((((((.....)))))))))).))))).))------------.)))...))).((((.(((--(.(....)....))))---..)))).. ( -40.50) >consensus AGAUAGACAAGUCGGCCUGGGCGGAGCUUUAUGUGCAGUUUGCAUGUGAAGACCCCAUGGUGAUGGGCAAGGGGAUGUGGUGCAGGGGGCG__AAGGGGAGGGCGUUGUACCAGCCCCGA .(((......))).(((((((.(...((((((((((.....)))))))))).))))).)))........................(((((.......................))))).. (-31.17 = -31.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:04 2006