Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,597,790 – 5,597,887 |
Length | 97 |
Max. P | 0.599151 |
Location | 5,597,790 – 5,597,887 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.80 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -26.87 |
Energy contribution | -26.77 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.39 |
Mean z-score | -1.59 |
Structure conservation index | 0.85 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5597790 97 + 27905053 GGUGGUCACCGGCUUACGUUCUGGACGCGGCUUAAUGCCACUUAUGGUGGCUGCCUUCUGAUCCACUUUCUGCAAGAAUCGAAGAAGGAUUAGAUUU ((..(((((((.....((((...)))).(((.....))).....)))))))..)).((((((((..((((..........))))..))))))))... ( -34.40) >DroVir_CAF1 3469 96 + 1 UGUUGUGGGUGGCUUCUUUUCAGCACGUGGCUUAAUGCCGCUUAUUGUCGCAGCCUUCUUAUCGAUUUUCUGCAAGAAUAUG-UAACUAUGAAGUUU .((((((((((.((.......)))))(((((.....)))))......)))))))((((......((.(((.....)))...)-)......))))... ( -20.50) >DroSec_CAF1 3230 97 + 1 GGUGGUCACCGGCUUACGUUCUGGACGCGGUUUGAUGCCACUUAUAGUGGCCGCCUUCUGAUCCACUUUCUGCAAGAAUCGGAGAAGGAUUAGAUUU (((((((((.(((...((..(((....)))..))..))).......))))))))).((((((((..((((((.......)))))).))))))))... ( -33.80) >DroSim_CAF1 3497 97 + 1 GGUGGUCACCGGCUUACGUUCUGGACGCGGCUUGAUGCCACUUAUAGUGGCCGCCUUCUGAUCCACUUUCUGCAAGAAUCGGAGAAGGAUUAGAUUU (((((((((.......((((...)))).(((.....))).......))))))))).((((((((..((((((.......)))))).))))))))... ( -35.40) >DroEre_CAF1 3141 97 + 1 AGUGGUCACCGGCUUACGUUCUGGACGCGGCUUGAUGCCACUUAUAGUGGCCGCCUUCUGAUCCACUUUCUGCAAGAAUCGGAGUAGGAUAAGAUUU .((((((((.......((((...)))).(((.....))).......))))))))..(((.((((...(((((.......)))))..)))).)))... ( -27.30) >DroYak_CAF1 3137 97 + 1 GGUGGUCACCGGCUUACGUUCCGGACGCGGCUUGAUGCCACUUAUGGUGGCCGCCUUCUGAUCCACUUUCUGCAAGAAUCGGACUAGGAUUAGAUUU (((((((((((((...((...))...))(((.....))).....))))))))))).((((((((....((((.......))))...))))))))... ( -37.70) >consensus GGUGGUCACCGGCUUACGUUCUGGACGCGGCUUGAUGCCACUUAUAGUGGCCGCCUUCUGAUCCACUUUCUGCAAGAAUCGGAGAAGGAUUAGAUUU ((((((((((((........))))....(((.....)))........)))))))).((((((((...(((((.......)))))..))))))))... (-26.87 = -26.77 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:16 2006