Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,590,713 – 5,590,804 |
Length | 91 |
Max. P | 0.652403 |
Location | 5,590,713 – 5,590,804 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 72.70 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -22.06 |
Energy contribution | -21.87 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.41 |
Mean z-score | -1.12 |
Structure conservation index | 0.65 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5590713 91 + 27905053 AGCCCAGCUCGCAAGCGGAGUGUCGGUGGCGGUGUGUCACUAAGCCGUCGCAGCUGCUUGCCCGUCUCCAAGCUAACAA-AGAGCAGCAUAA .((...((((((((((((..((.((..(((((((...))))..)))..)))).))))))))..((......))......-.)))).)).... ( -32.10) >DroPse_CAF1 970 91 + 1 AGUCCAUCCCGCAAGAUGGGCGCAGGCGGCGGGCUACCAGUAAGCCGCCGGAGCGUUUUGCCUAUACCCAAGACCAAAU-CUGGCAUUUCGC .(((((((......)))))))...((((((..((.....))..))))))...(((...((((.................-..))))...))) ( -35.01) >DroSec_CAF1 1088 91 + 1 AGCCCAGCUCGCA-GCGGAGUAUCGGCGGCGGUGUUCCACUAAGCCGUCGCAGCUGCUUGCCCGUCUCCAAGCUAACAAAAGAGCAACAUAA ......((((..(-((((((...((((((((((..........)))))))).((.....)).)).))))..))).......))))....... ( -28.70) >DroEre_CAF1 1083 91 + 1 AGCCCAGCUCGCAAGCUGAGUGUCGGCGGUGGUCUGGCGGUAGGGCGCCGCAGCUGCUUGCCCGUUUCCAAGCUAACAA-AGGGUAGCAACA .((((((((.((..((((.....))))((((.((((....)))).))))))))))(((((........)))))......-.))))....... ( -33.70) >DroYak_CAF1 1285 91 + 1 AGCCCAGCUCGCAAGCUGAGUGUCGGCGGCGGUCUGGCGGUAAGCCGCCGCAGCUGCUUGCCCGUCUCCAAGCUACCAA-AGGGCAGCANNN .((((((((.((..((((.....))))(((((.((.......)))))))))))))(((((........)))))......-.))))....... ( -38.10) >DroPer_CAF1 970 91 + 1 AGUCCAUCCCGCAAGAUGGGCGCAGGCGGCGGGCUACCAGUAAGCCGCCGGAGCGUUUUGCCUAUACCCAAGACCAAAU-CUGGCAUUUCGC .(((((((......)))))))...((((((..((.....))..))))))...(((...((((.................-..))))...))) ( -35.01) >consensus AGCCCAGCUCGCAAGCUGAGUGUCGGCGGCGGUCUGCCAGUAAGCCGCCGCAGCUGCUUGCCCGUCUCCAAGCUAACAA_AGGGCAGCACAA .((((.....((((((((.....(((((((...(.....)...)))))))...))))))))..((......))........))))....... (-22.06 = -21.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:15 2006