Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,575,418 – 5,575,538 |
Length | 120 |
Max. P | 0.616597 |
Location | 5,575,418 – 5,575,538 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -34.05 |
Consensus MFE | -22.98 |
Energy contribution | -23.21 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.37 |
Mean z-score | -1.91 |
Structure conservation index | 0.67 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5575418 120 + 27905053 GCGAAGUACACCAGCGCCAUGGCUGACAUAUUCACGCAAGUUUUCAACUGGCUGCCGUUGUGCCACUGCAUCAACCAAAAGAUCCUGGUCAUGCACGGCGGGCUCUUCUCCACGGAAGAC (((.((((...((((......))))...))))..)))............(.((((((((((((((..(.(((........))).)))).)))).))))))).)((((((....)))))). ( -32.30) >DroVir_CAF1 9694 120 + 1 GCCAAGUAUAACAACACAAUGGCGAAUAUAUUUACGCAAGUAUUCAACUGGCUGCCAUUAUGCCAUUGCAUAAAUCAGAAGAUUCUGGUUAUGCAUGGGGGCCUCUUUUCAUCAGACAAU (((...........((.(((((((..((....(((....)))......))..))))))).))((((.((((((.(((((....))))))))))))))).))).................. ( -32.10) >DroGri_CAF1 10174 120 + 1 GCCAAGUAUACUAGCACAAUGGCGGAUAUAUUUACGCAAGUAUUUAACUGGUUGCCGUUAUGCCAUUGCAUCAAUCAGAAGAUCCUGGUAAUGCAUGGUGGUCUCUUCUCGUCAAACAAU ((((.........(((.((((((((...((..(((....)))..)).....)))))))).)))...(((((..(((((......))))).)))))))))..................... ( -30.00) >DroWil_CAF1 8745 120 + 1 GCCAAGUAUACCAGCACUAUGGCGGAUAUCUUUACGCAAGUGUUCAAUUGGCUGCCAUUGUGCCAUUGUAUCAAUCAGAAGAUUCUUGUCAUGCAUGGCGGCCUCUUUUCAUCGGACAAU ((((.((((..((((((.(((((((.......(((....))).........))))))).)))).........((((....))))..))..)))).))))..................... ( -32.19) >DroMoj_CAF1 9992 120 + 1 GCCAAGUAUACCAGUACAAUGGCGGAUAUAUUUACGCAAGUAUUUAACUGGCUGCCAUUAUGCCAUUGCAUUAACCAGAAAAUCCUGGUAAUGCAUGGCGGUCUGUUCUCAUCAGACAAU .....((((....))))((((((((...((..(((....)))..)).....)))))))).((((((.((((((.((((......))))))))))))))))(((((.......)))))... ( -44.50) >DroAna_CAF1 10176 120 + 1 GCCAAGUACACCAGUGCAAUGGCAGACAUAUUUACGCAGGUGUUCAACUGGCUUCCGCUCUGCCACUGCAUCAAUCAAAAGAUCUUGGUUAUGCACGGCGGACUCUUCUCCUCAGACAAU (((..((((....))))..(((((((..........(((........)))((....))))))))).(((((.((((((......))))))))))).)))(((......)))......... ( -33.20) >consensus GCCAAGUAUACCAGCACAAUGGCGGAUAUAUUUACGCAAGUAUUCAACUGGCUGCCAUUAUGCCAUUGCAUCAAUCAGAAGAUCCUGGUAAUGCAUGGCGGCCUCUUCUCAUCAGACAAU (((..........(((.((((((((.......(((....))).........)))))))).)))...(((((..(((((......))))).))))).)))..................... (-22.98 = -23.21 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:12 2006