Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,574,693 – 5,574,810 |
Length | 117 |
Max. P | 0.535010 |
Location | 5,574,693 – 5,574,810 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.40 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -18.41 |
Energy contribution | -18.60 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.25 |
Mean z-score | -1.44 |
Structure conservation index | 0.64 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5574693 117 - 27905053 CUAUAUAGAGUAAAUAUAAGCCACUUACUUAUGUUUUCCAUGUCGCUGUACAUCUCUGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGUUCGAAGGCGCGCAUUUUGACA .....(((((.(((((((((.......)))))))))...((((......))))))))).(.((((((((.((((((.............))))))...)))))))).)......... ( -32.52) >DroPse_CAF1 6767 117 - 1 CUACAUAAUACUAAUAGUGGCUACUUACUUAUGGUUUCCAUGUCCCUGUACAUCUCUGAGAGCGUUUUUUCGGGCUUGUCAACUGCAAUGGCCCGCUCGAAGGCACGCAUUUUCACA ........(((.....((((..(((.......)))..))))......)))......(((((((((.(((((((((..((((.......))))..))))))))).))))..))))).. ( -29.10) >DroEre_CAF1 6010 117 - 1 CAACAGGGAGAACGUAUUAGCCACUUACUUAUGUUCUCCAUAUCCCUAUACAUCUCAGCGAGCGUCUUCUCUGGUUUAUCCACAGCAAUGGCCCGUUCAAAGGCGCGCAUUUUGACA ...(((((((((((((.............))))))))))..................((..(((((((...(((.....)))((....)).........)))))))))...)))... ( -26.52) >DroYak_CAF1 6063 117 - 1 CAACAAGGAGUAAAUAUAAGCCACUCACUUAUGUUCUCCAUGUCACUAUACAUCUCAGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGUUCGAAGGCGCGCAUUUUUACA ..(((.((((..((((((((.......)))))))))))).)))................(.((((((((.((((((.............))))))...)))))))).)......... ( -35.22) >DroAna_CAF1 9388 107 - 1 ----------UUAGUAUAGUUUACCCACUUAUAUUCUCCAUGUCCCUGUACAUCUCUGAGAGCGUCUUCUCCGGCUUGUCCACUGCAAUUGCCCGCUCGAAGGCGCGCAUUUUUACG ----------...(((..................((((.((((......))))....))))((((((((.(.(((((((.....))))..))).)...)))))))).......))). ( -21.80) >DroPer_CAF1 8709 117 - 1 CUACAUAAUACUAAUAGUGGCUACUUACUUAUGGUUUCCAUGUCCCUGUACAUCUCUGAGAGUGUUUUUUCGGGCUUGUCAACUGCAAUGGCCCGCUCGAAGGCACGCAUUUUCACA ........(((.....((((..(((.......)))..))))......)))......(((((((((.(((((((((..((((.......))))..)))))))))...))))))))).. ( -28.60) >consensus CUACAUAGAGUAAAUAUAAGCCACUUACUUAUGUUCUCCAUGUCCCUGUACAUCUCUGAGAGCGUCUUCUCGGGCUUAUCCACAGCAAUGGCCCGCUCGAAGGCGCGCAUUUUCACA ...................((.............((((.((((......))))....))))((((((((.((((((.............))))))...))))))))))......... (-18.41 = -18.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:11 2006