Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,570,070 – 5,570,165 |
Length | 95 |
Max. P | 0.614274 |
Location | 5,570,070 – 5,570,165 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 74.74 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -18.05 |
Energy contribution | -18.50 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.06 |
Mean z-score | -1.33 |
Structure conservation index | 0.68 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5570070 95 - 27905053 GGGGCACUCAGCCCAAAAGGUCCUCCUCCGCCUCCACCACCGCCAUUGGGAGCAUUUCUGCCUCCGGGACCACCACUACCUCCAGGGCCAUUUCU .((((.....))))....((((((.......................((..(((....)))..))((.....)).........))))))...... ( -26.30) >DroSec_CAF1 1338 95 - 1 GGGGCACUCAGGCCAAACGGUCCUCCCCCGCCUCCACCACCGCCAUUGGGAGCCCGUCUGCCACCGGGACCACCACUUCCUCCAGGGCCAUCUCU ..(((.....(((...((((..(((((..((..........))....))))).))))..))).((.(((...........))).)))))...... ( -27.00) >DroYak_CAF1 1440 74 - 1 GGGGCCCUUAGGCCCAACGGUCCU---CCGCCUCCACCCCCGCCAUCGGGAGACCCUCUGCCUCCGGGACCACCU------------------CU (((((((..((((.....((((..---(((....(......)....)))..))))....))))..))).)).)).------------------.. ( -26.50) >consensus GGGGCACUCAGGCCAAACGGUCCUCC_CCGCCUCCACCACCGCCAUUGGGAGCCCCUCUGCCUCCGGGACCACCACU_CCUCCAGGGCCAU_UCU (((((......)))....(((((......((..........))...(((..((......))..)))))))).))..................... (-18.05 = -18.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006