Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,566,101 – 5,566,215 |
Length | 114 |
Max. P | 0.765200 |
Location | 5,566,101 – 5,566,215 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.19 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -22.65 |
Energy contribution | -23.15 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.20 |
Mean z-score | -2.18 |
Structure conservation index | 0.64 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5566101 114 - 27905053 UCUGUACUCGCAGAUGAAAUGAAACUAGAUACCAUG---GGCGGACUGCGUAGGUUUCAGUUUCUUUGUCCGGCAAAAAGGAUAAGACGGUCAUCAGAGCGA---GAGAAGUCGAGAGAA ......(((((.(((((...((((((.((.(((.((---.((.....)).))))).))))))))(((((((........)))))))....)))))...))))---).....((....)). ( -34.80) >DroEre_CAF1 5530 114 - 1 UCUGUACUCGCAGAUGAAAUGAAACUAGAUACCUUG---GGCGGACUGCGUAGGUUUCAGUUUCUUUGUCCGGCAAAAAGGAUAAGACGUUCAUCGGAGCGA---GAGGAGUCGAGAGAA (((...(((((.((((((..((((((.((.((((.(---.((.....)).))))).))))))))(((((((........)))))))...))))))...))))---).))).((....)). ( -37.70) >DroYak_CAF1 5402 114 - 1 UCUGUACUCGCAGAUGAAAUGAAACUAGAUACCUUG---GGCGGACUGCGUAGGUUUCAGUUUCUUUGUCCGGCAAAAAGGAUAAGACGUUCAUCGGAGCGA---GAGGAGUCGAGAGAA (((...(((((.((((((..((((((.((.((((.(---.((.....)).))))).))))))))(((((((........)))))))...))))))...))))---).))).((....)). ( -37.70) >DroAna_CAF1 7238 120 - 1 UCUCUACUCGUAAUUGAAAUGAAACGAAAUACAUUGGUGGUCUAACUACCAUGGUUUUAGUUUCUUUGUCCGGCAAAGAGGACAAGAUGUUCAUCUCAGUAAGCAGGGGAAUCGAGAGGA ..(((.((((....((((..((((((((((....((((((.....))))))..))))).)))))(((((((........)))))))...))))((((........))))...)))).))) ( -31.80) >consensus UCUGUACUCGCAGAUGAAAUGAAACUAGAUACCUUG___GGCGGACUGCGUAGGUUUCAGUUUCUUUGUCCGGCAAAAAGGAUAAGACGUUCAUCGGAGCGA___GAGGAGUCGAGAGAA (((....((((.((((((..((((((.((.((((.....(.....).....)))).))))))))(((((((........)))))))...))))))...))))....)))..((....)). (-22.65 = -23.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:09 2006