Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,560,923 – 5,561,027 |
Length | 104 |
Max. P | 0.694989 |
Location | 5,560,923 – 5,561,027 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.79 |
Mean single sequence MFE | -33.01 |
Consensus MFE | -17.36 |
Energy contribution | -19.20 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.36 |
Mean z-score | -1.83 |
Structure conservation index | 0.53 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5560923 104 - 27905053 ACUGCAACAUCACCGGUGCGAGGCCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGCAGGGUCAAUG----UCGGUGGUCACAAUCC--GGCGCAGCCGCUCCAU .((((.......((((((.((((....)))))))((.(((((.(((((((((.((....)).)))))))..)----).)))))..))....)--)).))))......... ( -37.60) >DroPse_CAF1 280 98 - 1 AUUGCAACAUAAGCGGAAUUAGACCAACAUCAACGUUUCAUCAACUUUCUUUUCCACAAUCAAGAGUGCAU----------AGCCAUAACCA--UUCACAAUCAUUGCUU ...((((.....(.((((..(((........................))).)))).)......(((((..(----------(....))..))--))).......)))).. ( -9.46) >DroSim_CAF1 281 104 - 1 ACUGCAACAUCACCGGAGCGAGGCCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGCAGGGUCAAUG----UCGGUGGCCACAAUCC--GGCGCAGCCGAUCCAU .((((.....(((((((((((((....))))...)))))..((..(((((((.((....)).))))))).))----..))))(((.......--)))))))......... ( -40.30) >DroEre_CAF1 454 104 - 1 AUUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG----UCGGUGGCCACAAUCC--GGCGCAGCCACUGCAU ............((((((.(((......))))..((.(((((.((((((((((((....))))))))))..)----).)))))..))..)))--)).((((...)))).. ( -41.00) >DroYak_CAF1 281 104 - 1 ACUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG----UCGGUGGCCACAAUCC--GGUGCAGCCAAUGCAU ..((((....((((((((.(((......))))..((.(((((.((((((((((((....))))))))))..)----).)))))..))..)))--)))).......)))). ( -43.50) >DroAna_CAF1 519 110 - 1 GUUGCACCAUGACCGGAACAAGACCCACCUCUACGUUCCACCAGUUGUCCUUCCCCCAGGGCAGAGUCAAUGGCCAUCAGCCGCCGCCACCCCAGCCCCUGCCCCUGCAU ..(((((((((((.(((((.(((......)))..))))).....(((((((......))))))).))).))))....(((..((.(......).))..)))....)))). ( -26.20) >consensus ACUGCAACAUCACCGGAGCGAGACCGACCUCCACGUUCCACCAGCUGACCUUUCCCCAGGGAAGGGUCAAUG____UCGGUGGCCACAAUCC__GGCGCAGCCACUGCAU .((((.....((((((((((((......)))...)))))......(((((((.((....)).))))))).........))))(((.........)))))))......... (-17.36 = -19.20 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:08 2006