Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,559,973 – 5,560,093 |
Length | 120 |
Max. P | 0.974308 |
Location | 5,559,973 – 5,560,093 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -21.82 |
Energy contribution | -22.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.83 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5559973 120 + 27905053 GGAAUGUAUCAAAAAAGCUGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUUAUUUGACUAAACCUAUUCUCUGGUGCAUUUGGGUUUUUUAUUUCUCUUUAACGAAAAA .((((((((((...(((((.....))))).(((((...(((((....)))))(((((((...))))))).....)))))...))))))))))..........((((........)))).. ( -25.40) >DroSec_CAF1 4647 116 + 1 G-AAUGUAUCAAAAAAGCUGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUCAUUUGACUAAACCUAUUCUCUGGUGCAUUUG--UUUUU-UUUUCUCUUUUAAGAAAAA (-(((((((((...(((((.....))))).(((((...(((((....)))))(((((((...))))))).....)))))...)))))))))).--....(-((((((......))))))) ( -27.00) >DroSim_CAF1 2903 117 + 1 G-AAUGUAUCAAAAAAGCAGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUCAUUUGACUAAACCUAUUCUCUGGUGCAUUUG--UUUUUUUUUUCUCUUUUAAGAAAAA (-(((((((((..............(((((........)))))....((((.(((((((...))))))).))))........)))))))))).--.....(((((((......))))))) ( -26.20) >DroEre_CAF1 2786 113 + 1 G-AAUGUAUCAAAAAAGCUGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUCAUUUGACUAAACCUAUUCUCUGGUGCAUUUG--UUUUU-G---UUCUUUUUAGAAAAA (-(((((((((...(((((.....))))).(((((...(((((....)))))(((((((...))))))).....)))))...)))))))))).--.....-.---((((....))))... ( -25.50) >DroYak_CAF1 3007 113 + 1 G-AAUGUAUCAAAAAAGCUGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUCAUUUGACUAAACCUAUUCUCUGGUGCAUUUG--UUUCU-G---UUCUUUGAAGAAAAA .-((((((.(......).))))))..((((((.((((((((((((..((...(((((((...)))))))...(((........)))))..)))--)))))-.---))))))))))..... ( -27.40) >consensus G_AAUGUAUCAAAAAAGCUGCAUUGGCUUCAAUAGAAGGAAGCAAUCGUUUCGUCAAAUUUCAUUUGACUAAACCUAUUCUCUGGUGCAUUUG__UUUUU_GUUUCUCUUUUAAGAAAAA ..(((((((((...(((((.....))))).(((((...(((((....)))))(((((((...))))))).....)))))...)))))))))............................. (-21.82 = -22.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:07 2006