Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 856,891 – 857,003 |
Length | 112 |
Max. P | 0.962945 |
Location | 856,891 – 857,003 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -42.70 |
Consensus MFE | -30.58 |
Energy contribution | -32.83 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.72 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 856891 112 + 27905053 AGCACAAUAUAUUUAUAUUGUAUUUAGGUGGCUUGUCAGCCGGUGAUUGAUGUGGCAGCGG-CUGCU-------GGCUGCCGGCUUUGGACUUUCUGCCAUAUUCGGCGCACAAAGCCGG ...(((((((....))))))).....((..(((.(.((((((.((..........)).)))-)))).-------)))..))(((((((.......((((......))))..))))))).. ( -43.30) >DroSec_CAF1 31701 115 + 1 AGCACAAUAUAUUUAUAUUGUAUUUAGGUGGCUUGUCAGCCGGUGAUUGAUGUGGCAGCGG-CUGCUGGCUGCUGGCUGCCGGCUUUGGACUUUCUGCCAUAUUCGGCGCACAAAG---- .(((((((((....)))))))......(((((..(((((((((((........(.((((((-(.....))))))).)))))))))...))).....))))).......))......---- ( -40.50) >DroSim_CAF1 30859 119 + 1 AGCACAAUAUAUUUAUAUUGUAUUUAGGUGGCUUGUCAGCCGGUGAUUGAUGUGGCAGUGG-CUGCUGGCUGCUGGCUGCCGGCUUUGGACUUUCUGCCAUAUUCGGCGCACAAAGCCGG ((((((((((....))))))).....((..(((.(.((((((.((..........)).)))-)))).)))..)).))).(((((((((.......((((......))))..))))))))) ( -45.80) >DroEre_CAF1 31927 120 + 1 AGCACAAUAUAUUUAUAUUGUAUUUAGGUGGCUUGUCAGCCGGUGAUUGAUGUGGCUGCUGCCUGCUGCCUGCUGGCUGCCGACUUUGGAUUUUCUGCCGUAUUCGGCGCACAAAGCCGG ((((((((((....)))))))....(((..((..(.((((.(((.((....)).))))))))..))..))))))(((((((((...(((........)))...)))))......)))).. ( -41.20) >consensus AGCACAAUAUAUUUAUAUUGUAUUUAGGUGGCUUGUCAGCCGGUGAUUGAUGUGGCAGCGG_CUGCUGGCUGCUGGCUGCCGGCUUUGGACUUUCUGCCAUAUUCGGCGCACAAAGCCGG ...(((((((....))))))).....((..(((...((((((((....................))))))))..)))..))(((((((.......((((......))))..))))))).. (-30.58 = -32.83 + 2.25)
Location | 856,891 – 857,003 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -36.47 |
Consensus MFE | -29.90 |
Energy contribution | -30.84 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.06 |
Mean z-score | -2.95 |
Structure conservation index | 0.82 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 856891 112 - 27905053 CCGGCUUUGUGCGCCGAAUAUGGCAGAAAGUCCAAAGCCGGCAGCC-------AGCAG-CCGCUGCCACAUCAAUCACCGGCUGACAAGCCACCUAAAUACAAUAUAAAUAUAUUGUGCU ..(((((((..((((......))).....)..)))))))((((((.-------.....-..))))))............((((....)))).......((((((((....)))))))).. ( -38.10) >DroSec_CAF1 31701 115 - 1 ----CUUUGUGCGCCGAAUAUGGCAGAAAGUCCAAAGCCGGCAGCCAGCAGCCAGCAG-CCGCUGCCACAUCAAUCACCGGCUGACAAGCCACCUAAAUACAAUAUAAAUAUAUUGUGCU ----(((((..((((......))).....)..)))))..((((((..((........)-).))))))............((((....)))).......((((((((....)))))))).. ( -31.60) >DroSim_CAF1 30859 119 - 1 CCGGCUUUGUGCGCCGAAUAUGGCAGAAAGUCCAAAGCCGGCAGCCAGCAGCCAGCAG-CCACUGCCACAUCAAUCACCGGCUGACAAGCCACCUAAAUACAAUAUAAAUAUAUUGUGCU ..(((((((..((((......))).....)..)))))))(((((...((........)-)..)))))............((((....)))).......((((((((....)))))))).. ( -36.40) >DroEre_CAF1 31927 120 - 1 CCGGCUUUGUGCGCCGAAUACGGCAGAAAAUCCAAAGUCGGCAGCCAGCAGGCAGCAGGCAGCAGCCACAUCAAUCACCGGCUGACAAGCCACCUAAAUACAAUAUAAAUAUAUUGUGCU (((((((((...((((....)))).(.....))))))))))..(((....)))(((.(((..(((((............)))))....)))........(((((((....)))))))))) ( -39.80) >consensus CCGGCUUUGUGCGCCGAAUAUGGCAGAAAGUCCAAAGCCGGCAGCCAGCAGCCAGCAG_CCGCUGCCACAUCAAUCACCGGCUGACAAGCCACCUAAAUACAAUAUAAAUAUAUUGUGCU ..(((((((.((((((....)))).....)).)))))))((((((................))))))............((((....)))).......((((((((....)))))))).. (-29.90 = -30.84 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:03 2006