Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,559,099 – 5,559,214 |
Length | 115 |
Max. P | 0.518462 |
Location | 5,559,099 – 5,559,214 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.09 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -18.60 |
Energy contribution | -21.20 |
Covariance contribution | 2.60 |
Combinations/Pair | 1.23 |
Mean z-score | -1.59 |
Structure conservation index | 0.63 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5559099 115 - 27905053 GC--GAAUGUGAAUGGAUCAAUGUGAGAAUUCAAUCCAUCCAUAAACACACGAGGAGGAAAACAAAAUUCGAUCAAGAGGCGACU---UCUUGGUCAUGUGUGUCUGGAUGGGUUGGGUG ..--........................((((((((((((((...(((((((.....(((.......)))((((((((((...))---)))))))).))))))).)))))))))))))). ( -39.40) >DroSec_CAF1 3760 110 - 1 GC--GAAUGUAAAUGGAUCAA--------UUCAAUUCAUCCAUAAACACACGAGGAGGAAAACAAAAUUCGAUCAAGAGGCGACUUCUUCUUGGGCAUGUGUGUCUGGGUGGGUUGGGUG ..--................(--------(((((((((((((...(((((((.....(((.......)))(..(((((((......)))))))..).))))))).)))))))))))))). ( -32.40) >DroSim_CAF1 2035 110 - 1 GC--GAAUGUAAAUGGAUCAA--------UUCAAUUCAUCCAUAAACACACGAGGAGGAAAACAAAAUUCGAUCAAGAGGCGACUUUUUCUUGGGCAUGUGUGUCUGGGUGGGUUGGGUG ..--................(--------(((((((((((((...(((((((.....(((.......)))(..(((((((......)))))))..).))))))).)))))))))))))). ( -30.50) >DroEre_CAF1 1893 96 - 1 GCAUG-GGGAAAAUGGAGCAAUAUG--AAUUCUAUCCAACCAUAAACACAUGUGAAGGAAAACAAAAUUCGAUCAAGGGGCGACU---------------------GGUUGGGUUGGGUA .((((-..(.........)..))))--.....(((((((((.........(((........))).....((((((.(......))---------------------)))))))))))))) ( -18.40) >DroYak_CAF1 2110 115 - 1 GCAUGAGGGAAAAUGGAGCAAUGUG--AAUUCUAUCCAUCCAUAAACACAUAAGAAGGAAAACAAAAUUCGAUCAAGAGGCGACU---GCUUGGGCAUGUGUGGCUGGUUGGGUUGGGUA .(((........)))..........--.((((.(((((.(((...((((((..(((...........)))(..((((((....))---.))))..)))))))...))).))))).)))). ( -26.00) >consensus GC__GAAUGUAAAUGGAUCAAU_UG__AAUUCAAUCCAUCCAUAAACACACGAGGAGGAAAACAAAAUUCGAUCAAGAGGCGACU___UCUUGGGCAUGUGUGUCUGGGUGGGUUGGGUG ............................((((((((((((((...(((((((.(((...........)))..(((((((....))....)))))...))))))).)))))))))))))). (-18.60 = -21.20 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:06 2006