Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,555,075 – 5,555,173 |
Length | 98 |
Max. P | 0.565282 |
Location | 5,555,075 – 5,555,173 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -14.36 |
Energy contribution | -15.03 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.30 |
Mean z-score | -1.59 |
Structure conservation index | 0.62 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5555075 98 - 27905053 AAUUUCAGUUUUAAAAACAUGCAUCGGAUACAUGACGACGAGUAUUCCGAGGAUGCCAAGGAAUCGGACUUUAAGAGUUCGAUUCAGA---AGGAGAUAUC .(((((..(((......(((.(.((((((((.((....)).))).)))))).))).....(((((((((((...))))))))))))))---..)))))... ( -26.90) >DroSec_CAF1 3315 95 - 1 ---UUCAGUUUUAAAAACAUGCAUCGGAUACAUGACGACGAGUAUUCCGACGAUGCCAAGGAAUCGGACUUCAAGGGUUCGAUUCAGA---AGGAGAUAUC ---....(((((........(((((((((((.((....)).)))))....))))))....((((((((((.....))))))))))...---..)))))... ( -23.90) >DroSim_CAF1 3778 98 - 1 AAUUACAGUUUUAAAAAUAUGCAUCGGAUACAUGACGACGAGUAUUCCGAUGAUGCGAAGGAAUCGGACUUCAAGGGUUCGAUUCAAA---AGGAGAUAUC .......(((((.........((((((((((.((....)).))).)))))))........((((((((((.....))))))))))...---..)))))... ( -25.70) >DroEre_CAF1 3860 98 - 1 AAUUUCAGUCUCGAAAACAUGCAUCGGAUACACGACGACGAGUAUUCUGAGGAUGCCAAGGAAUCUGACUUCAAGGGCUCAAUUCAGA---AGGAGAUAUC .......(((((....((.(((.(((......))).).)).)).(((((((...(((...(((......)))...)))....))))))---).)))))... ( -23.80) >DroWil_CAF1 8386 101 - 1 UCUUACAGUAUCUUAACAAUGAUUCGAAUUCAGGAUGACGAGUAUUCUGAAGACAUAAAGGAAUCAGAUCCUGAAGAAACAACUCAUCAAAAAGAAUUAGC ((((.(((.((((.......(((((...(((((((((.....)))))))))..(.....)))))))))).)))))))........................ ( -17.21) >DroYak_CAF1 4017 98 - 1 AAUUUCAGUCUUAAAAACAUGCAUCGGAUACAUGACGACGAGUAUUCUGAGGAUGCCAAGGAAUCGGACUACAAGGGUUCAAUUCAGA---AGGAGAUAUC .(((((..(((.........(((((((((((.((....)).))))))....)))))....((((.(((((.....))))).)))))))---..)))))... ( -22.40) >consensus AAUUUCAGUUUUAAAAACAUGCAUCGGAUACAUGACGACGAGUAUUCCGAGGAUGCCAAGGAAUCGGACUUCAAGGGUUCAAUUCAGA___AGGAGAUAUC .......(((((........(((((((((((.((....)).))))))....)))))....((((.(((((.....))))).))))........)))))... (-14.36 = -15.03 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006