Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,554,026 – 5,554,118 |
Length | 92 |
Max. P | 0.734829 |
Location | 5,554,026 – 5,554,118 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.87 |
Mean single sequence MFE | -13.85 |
Consensus MFE | -10.19 |
Energy contribution | -10.58 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.13 |
Mean z-score | -2.01 |
Structure conservation index | 0.74 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5554026 92 + 27905053 UACAUAAUUUACUUACCCUGUUGCACAUCAAGACCUGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUCCAAAA---ACCAUUAUUAUUUUUAUAC- ............((((((((((((.....((((.....))))....))).)))))))))..............---...................- ( -14.70) >DroSec_CAF1 2268 87 + 1 UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUUCAA-A---ACCAUUAUUAUUU----AU- ...((((.....((((((((((((.....((((.....))))....))).)))))))))..))))......-.---.............----..- ( -15.10) >DroSim_CAF1 2728 87 + 1 UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAUAUUCAA-A---ACCAUUAUUAUUU----AU- ...((((.....((((((((((((.....((((.....))))....))).)))))))))..))))......-.---.............----..- ( -15.10) >DroEre_CAF1 2806 87 + 1 UACAUAGUUUACUUACCCUGUUGCACAUCAAGCCCGGCUCUUUCCAGCAUAUAGGGUAAACCUAAAGGCAA-A---AAAAUUAUUAUUU----AU- ...(((((((..((((((((((((......(((...))).......))).))))))))).((....))...-.---.))))))).....----..- ( -16.62) >DroYak_CAF1 2962 87 + 1 UACAUAGUUUACUUACCCUGUUGCACAUCAAGCCCGGCUCUUUCAAGCAUGUAGGGUAAUCCUAAAGCCAA-U---ACAAUUAUUAUUU----AU- ............((((((((..((.......))...(((......)))...))))))))............-.---.............----..- ( -11.80) >DroPer_CAF1 8120 92 + 1 CACAUCCUACACUCACCUUGUUGUACAUCAAGCCCAGCUCUCUCUAGCAUAUAUGGCAAGCCUAAAAAUAAAGUACAAAAUUAGUAUAA----AUC ....................((((((..........(((......)))......((....))..........))))))...........----... ( -9.80) >consensus UACAUAGUUUACUUACCCUGUUGCACAUCAAGACCGGCUCUUUCAAGCAUAUAGGGUAAUCCUAAAUCCAA_A___ACAAUUAUUAUUU____AU_ ............((((((((((((.....(((.......)))....))).)))))))))..................................... (-10.19 = -10.58 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:04 2006