Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,550,585 – 5,550,731 |
Length | 146 |
Max. P | 0.843343 |
Location | 5,550,585 – 5,550,702 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -19.40 |
Energy contribution | -20.82 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.29 |
Mean z-score | -1.95 |
Structure conservation index | 0.61 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5550585 117 + 27905053 UUAUUUGGCGUUUAAAGGUUUUGGGUUAUGGAAAACGCUGAACGAUUUCAUGCCAUGUGCUGAAAGAGCGACAUUCG-GCGAAAUAUAAUGUACAAAUC--AAGCAUGUGAAAACAUGUU ................(((((((.((((((.....(((((((((.(((((.((.....)))))))...))...))))-)))...)))))).)).)))))--.(((((((....))))))) ( -28.90) >DroSec_CAF1 9719 118 + 1 UAAUUUGGUGUUUAAAGGUUUUGGGUUAUGGAAAACGCUGAACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCGCGCGAAAUAUAAUGUACAAAUC--GGGCAUGUGAAAACAUGUU .....(((((((.(((.((((.(.(((......))).).)))).))).)))))))(((((........((((....)).)).........)))))....--.(((((((....))))))) ( -30.43) >DroSim_CAF1 9783 118 + 1 UAAUUUGGUGUUUAAAGGUUUUGGGUUAUGGAAAACGCUGAACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCGCGCGAAAUAUAAUGUACAAAUC--GGGCAUGUGAAAACAUGUU .....(((((((.(((.((((.(.(((......))).).)))).))).)))))))(((((........((((....)).)).........)))))....--.(((((((....))))))) ( -30.43) >DroEre_CAF1 8863 117 + 1 UUUUUUGGCAAUUAAGGUUUAUGGGUUAUGGAAAACACUCAACGUUUUGAUGCCAUGUGCUGGAAGACUGGCUUCCA-GCGAAACAUAAUGUUCAAAUU--GUGUUUGUAAAAGCAUUUU .....(((((.((((..(...(((((..(....)..)))))..)..)))))))))(((((((((((.....))))))-)).(((((((((......)))--))))))......))).... ( -32.60) >DroYak_CAF1 8915 118 + 1 UUAGUCGGCGUUUAAUGUUUAUGGGUUAUGGAAAACGCUCAACGUUUUGAUGCCAUGUGCUGGAAGACUGGCUUUCA-GCAACAUAUAUUGUG-AAAUAGGGAGCAUGUGAAAGCAUGUU ......((((((.((((((...(.(((......))).)..))))))..))))))((((((((((((.....))))))-)).))))........-........(((((((....))))))) ( -35.80) >consensus UUAUUUGGCGUUUAAAGGUUUUGGGUUAUGGAAAACGCUGAACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCG_GCGAAAUAUAAUGUACAAAUC__GAGCAUGUGAAAACAUGUU ......((((((.(((.(((..(.(((......))).)..))).))).))))))...(((((((.(.....).)))).))).....................(((((((....))))))) (-19.40 = -20.82 + 1.42)
Location | 5,550,625 – 5,550,731 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -31.96 |
Consensus MFE | -15.18 |
Energy contribution | -18.12 |
Covariance contribution | 2.94 |
Combinations/Pair | 1.23 |
Mean z-score | -3.13 |
Structure conservation index | 0.47 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5550625 106 + 27905053 AACGAUUUCAUGCCAUGUGCUGAAAGAGCGACAUUCG-GCGAAAUAUAAUGUACAAAUC--AAGCAUGUGAAAACAUGUUUGUAACAUUGUACAUUUUAGUCGGAAGCA ..((((....(((((((((((.....))).))))..)-)))...((.(((((((((..(--((((((((....))))))))).....))))))))).))))))...... ( -33.40) >DroSec_CAF1 9759 106 + 1 AACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCGCGCGAAAUAUAAUGUACAAAUC--GGGCAUGUGAAAACAUGUUUGUAAC-AUGUAUAUUUUAGCCGGAAGCA ..((((((...((.....))....))))))((.((((.((((((((((((((......(--((((((((....)))))))))..))-)).)))))))).)))))).)). ( -31.70) >DroSim_CAF1 9823 107 + 1 AACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCGCGCGAAAUAUAAUGUACAAAUC--GGGCAUGUGAAAACAUGUUUGUAACAAUGUAUAUUUUAGCCGGAAGCA ..((((((...((.....))....))))))((.((((.((.......((((((((...(--((((((((....)))))))))......))))))))...)))))).)). ( -30.70) >DroEre_CAF1 8903 104 + 1 AACGUUUUGAUGCCAUGUGCUGGAAGACUGGCUUCCA-GCGAAACAUAAUGUUCAAAUU--GUGUUUGUAAAAGCAUUUUGGUUGCAAUGUAU--UUAAGCCGGAAGCA ...((((((((((....(((((((((.....))))))-)))(((((((((......)))--))))))......))))).(((((.........--...)))))))))). ( -31.40) >DroYak_CAF1 8955 106 + 1 AACGUUUUGAUGCCAUGUGCUGGAAGACUGGCUUUCA-GCAACAUAUAUUGUG-AAAUAGGGAGCAUGUGAAAGCAUGUUGGUUACAAUGUAUA-UUUAGCCGGAAGCA ...(((((...((....(((((((((.....))))))-)))..((((((((((-(.......(((((((....)))))))..))))))))))).-....))..))))). ( -32.60) >consensus AACGUUUUGAUGCCAUGUGCUGAAAGAGCGGCAUUCG_GCGAAAUAUAAUGUACAAAUC__GAGCAUGUGAAAACAUGUUUGUAACAAUGUAUAUUUUAGCCGGAAGCA ...(((((..(((...((((((......))))))....)))......((((((((......((((((((....)))))))).......)))))))).......))))). (-15.18 = -18.12 + 2.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:03 2006