Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,534,516 – 5,534,629 |
Length | 113 |
Max. P | 0.581455 |
Location | 5,534,516 – 5,534,629 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -26.49 |
Energy contribution | -27.93 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5534516 113 - 27905053 CAAUCUCGCCAAUGCGUCUCACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU ...((((((...((((.((.......)).))))......((..((((.(((((.....)))..))...((((((....))))))))))..))....))))))........... ( -37.10) >DroSec_CAF1 15379 101 - 1 CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGC------------AGCCGCAGCAACAGCGGGAAUCCUCAUCCU ...((((((...((((.(.........).))))......((..((((.((.((.....)))).((....))------------.))))..))....))))))........... ( -26.10) >DroSim_CAF1 13906 113 - 1 CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU ...((((((...((((.(.........).))))......((..((((.(((((.....)))..))...((((((....))))))))))..))....))))))........... ( -35.40) >DroYak_CAF1 13738 113 - 1 CAAUCUCGCCAAUGCAUCCCACAACCAGUCGCAGUCCCAGCACCGUCAGCCUGUCCAUCAGCAGCAGAUGCAGCUUCAGCUGCAGCCGCAGCAACAUCGGGAAUCCUCAUCCU .......((....)).((((..........(((((...(((..((((.((.(((......))))).))))..)))...))))).((....))......))))........... ( -26.00) >consensus CAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCCUACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGAAUCCUCAUCCU ...((((((...((((.(.........).))))......((..((((.((.(((......)))))...((((((....))))))))))..))....))))))........... (-26.49 = -27.93 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:54 2006