Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,532,976 – 5,533,069 |
Length | 93 |
Max. P | 0.576396 |
Location | 5,532,976 – 5,533,069 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.54 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -15.56 |
Energy contribution | -15.83 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.73 |
Structure conservation index | 0.67 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5532976 93 + 27905053 UAGCCCAGUGCUAUCGGUGACUUGGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUAGAAAUAAGGCAAUC------AAAUAAAUGCAA ..(((.....(((..((((.((...(((....((((((....))))))....)))...)).)))))))......)))....------............ ( -21.30) >DroPse_CAF1 13565 96 + 1 UAGCCCAGGGCGAUGGGUGAUUUGGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUGAUAUGCAGGGAGCUCGGGCUAGA---AUUAAA ((((((.((((...(((((.((((.(((....((((((....))))))....)))..)))))))))(.....).....))))))))))..---...... ( -30.40) >DroSim_CAF1 12614 93 + 1 UAGCCCAGUGCUAUCGGUGACUUGGUACAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUACGAACAAGGCAAUC------AAAUUAAUGCAA ..(((..((((((..(....).))))))....((((((....))))))...)))..((((....)))).......(((...------.......))).. ( -22.30) >DroEre_CAF1 12432 93 + 1 UAGCCCAGUGCUAUCGGUGACUUGGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUAGAGACAAGGAAAUU------UGAUCAAUGCAA ........(((....((((.((...(((....((((((....))))))....)))...)).))))....((((((....))------)).))...))). ( -20.30) >DroYak_CAF1 12199 93 + 1 UAGCCCAGUGCUAUCGGUGACUUUGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUAAAAACAAGCCAAUU------UAAUUGAUGCAA ((((.....))))..((((.((...(((....((((((....))))))....)))...)).)))).........((((((.------..))))..)).. ( -18.60) >DroPer_CAF1 13537 99 + 1 UAGCCCAGAGCGAUGGGUGAUUUGGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUGAAAUGCAGGGAGUUCCGGCUAGAAAAAUUAAA (((((....(((.((((((.((((.(((....((((((....))))))....)))..))))))))))...)))..((....)))))))........... ( -26.70) >consensus UAGCCCAGUGCUAUCGGUGACUUGGUGCAAAAGUUUUGAUCCCAGAACAAAGGCAAGUAGACACCUAAAAACAAGGCAAUU______AAAUAAAUGCAA ((((.....))))..((((.((...(((....((((((....))))))....)))...)).)))).................................. (-15.56 = -15.83 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:53 2006