Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 856,161 – 856,278 |
Length | 117 |
Max. P | 0.975300 |
Location | 856,161 – 856,278 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.84 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -33.67 |
Energy contribution | -35.80 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.05 |
Mean z-score | -3.01 |
Structure conservation index | 0.88 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 856161 117 + 27905053 GCUUCAUCCACAAUCCGAUUCGCCGU---UCGGUCACUCGAAGCCAUUCAGAAAAGCGAAUUGGAUUUUCAUUCGAAUUUUGAAUUCAUAAUUCUACGGAGUUGUCUCCGUGGCUGCGGU (((.((.((((((((((((((((..(---(((((........))).....)))..)))))))))))).......(((((.((....)).)))))...((((....)))))))).)).))) ( -37.70) >DroSec_CAF1 30977 120 + 1 GCUUCAUCCACAAUCCGAUUCGCCGUUCUUCGGUCACUCGAAGCCAUUGAGAAAAGCGAAUUGGAUUUUCAUUCGAAUUUUGAAUUCAUAAUUCUACGGAGUUGUCUCCGUGGCUGCGGU (((.((.((((((((((((((((..(((((.(((........)))...)))))..)))))))))))).......(((((.((....)).)))))...((((....)))))))).)).))) ( -41.70) >DroSim_CAF1 30127 120 + 1 GCUUCAUCCACAAUCCGAUUCGCCGUUCUUCGGUCACUCGAAGCCAUUGAGAAAAGCGAAUUGGAUUUUCAUUCGAAUUUUGAAUUCAUAAUUCUACGGAGUUGUCUCCGUGGCUGCGGU (((.((.((((((((((((((((..(((((.(((........)))...)))))..)))))))))))).......(((((.((....)).)))))...((((....)))))))).)).))) ( -41.70) >DroEre_CAF1 31234 116 + 1 GCUUCAUCCACAAUCCGAUUCGCCGU---UCGGCCACUCGA-GCCAUUCAGAAGAGCGAAUUGGAUUUUCAUUCGAAUUUUGAAUUUAUAUUUCCACGGAGUUGUCUCCCUGGCUGCGGU ((((((.....((((((((((((.((---((((....))))-))...((....))))))))))))))(((....)))...)))).........(((.((((....)))).)))..))... ( -31.80) >consensus GCUUCAUCCACAAUCCGAUUCGCCGU___UCGGUCACUCGAAGCCAUUCAGAAAAGCGAAUUGGAUUUUCAUUCGAAUUUUGAAUUCAUAAUUCUACGGAGUUGUCUCCGUGGCUGCGGU (((.((.((((((((((((((((..(((((.(((........)))...)))))..)))))))))))).......(((((.((....)).)))))...((((....)))))))).)).))) (-33.67 = -35.80 + 2.13)
Location | 856,161 – 856,278 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.84 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -29.65 |
Energy contribution | -31.90 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.81 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 856161 117 - 27905053 ACCGCAGCCACGGAGACAACUCCGUAGAAUUAUGAAUUCAAAAUUCGAAUGAAAAUCCAAUUCGCUUUUCUGAAUGGCUUCGAGUGACCGA---ACGGCGAAUCGGAUUGUGGAUGAAGC .((((....((((((....)))))).(((((.((....)).))))).......(((((.(((((((.(((.(..(.((.....)).)).))---).))))))).)))))))))....... ( -34.30) >DroSec_CAF1 30977 120 - 1 ACCGCAGCCACGGAGACAACUCCGUAGAAUUAUGAAUUCAAAAUUCGAAUGAAAAUCCAAUUCGCUUUUCUCAAUGGCUUCGAGUGACCGAAGAACGGCGAAUCGGAUUGUGGAUGAAGC .((((....((((((....)))))).(((((.((....)).))))).......(((((.(((((((.((((...((((.......).))).)))).))))))).)))))))))....... ( -37.40) >DroSim_CAF1 30127 120 - 1 ACCGCAGCCACGGAGACAACUCCGUAGAAUUAUGAAUUCAAAAUUCGAAUGAAAAUCCAAUUCGCUUUUCUCAAUGGCUUCGAGUGACCGAAGAACGGCGAAUCGGAUUGUGGAUGAAGC .((((....((((((....)))))).(((((.((....)).))))).......(((((.(((((((.((((...((((.......).))).)))).))))))).)))))))))....... ( -37.40) >DroEre_CAF1 31234 116 - 1 ACCGCAGCCAGGGAGACAACUCCGUGGAAAUAUAAAUUCAAAAUUCGAAUGAAAAUCCAAUUCGCUCUUCUGAAUGGC-UCGAGUGGCCGA---ACGGCGAAUCGGAUUGUGGAUGAAGC .((((..(((.((((....)))).)))........((((.......))))...(((((.(((((((.(((.....(((-(.....))))))---).))))))).)))))))))....... ( -37.20) >consensus ACCGCAGCCACGGAGACAACUCCGUAGAAUUAUGAAUUCAAAAUUCGAAUGAAAAUCCAAUUCGCUUUUCUCAAUGGCUUCGAGUGACCGA___ACGGCGAAUCGGAUUGUGGAUGAAGC .((((....((((((....)))))).(((((.((....)).))))).......(((((.(((((((.((((...((((.......).))).)))).))))))).)))))))))....... (-29.65 = -31.90 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:01 2006