Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,530,419 – 5,530,524 |
Length | 105 |
Max. P | 0.605390 |
Location | 5,530,419 – 5,530,524 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -27.27 |
Energy contribution | -27.78 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.65 |
Structure conservation index | 0.67 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5530419 105 - 27905053 GCAUCGUAGGAGUGGUUCAUAUAGCGAGAG-----GGCAGAGGGAUAGUAGCUCAGGUGGUCUCUCGCAUGUUCCCUCUUCCCCUUCCCCAUCCCCUUCCCUGCACCUUC (((..(.(((.((((........(.(((.(-----((.(((((((.....((....((((....))))..))))))))).)))))).)))))..))).)..)))...... ( -28.50) >DroSec_CAF1 11308 105 - 1 GCAUCGUAGGAGUGGUUCACAUGGCGAGAG-----GGGAGAGGGAUAGUAGCUCAGGUGGUCUCUCGCACGUUCCCUCUUCCCCUUCCGCUUCCCCUUUCCCGCUCCAUC ........(((((((.......((((..((-----((((((((((..((.((..(((.....))).))))..)))))).))))))..)))).........)))))))... ( -45.69) >DroSim_CAF1 9357 99 - 1 GCAUCGUAGGAGUGGUUCACAUGGCGAGAG-----GGGAGAGGGAUAGUAGCUCAGGUGGUCUCUCGCACGUUCCCUCUUCCCCU------UCCCCUUUCCCGCUCCUUG .......((((((((.......((.(..((-----((((((((((..((.((..(((.....))).))))..)))))).))))))------..)))....)))))))).. ( -41.20) >DroEre_CAF1 9752 108 - 1 GUAUCGUAGGAGUGGUUCACUAGGCGAGCGGCAGAGGGAGAGGGAUAGUAGCUCAGGUGGUCUCUCGCACGUUCCCUGUCCCUCUUCGCCG--CCCCUCCCCGCCCCUUC .......(((.((((.......((((.((((.(((((((.(((((..((.((..(((.....))).))))..))))).)))))))))))))--)).....)))).))).. ( -46.60) >consensus GCAUCGUAGGAGUGGUUCACAUGGCGAGAG_____GGGAGAGGGAUAGUAGCUCAGGUGGUCUCUCGCACGUUCCCUCUUCCCCUUCCCC_UCCCCUUCCCCGCUCCUUC ........((((((((((.......))).......((((((((((..((.((..(((.....))).))))..))))))))))..................)))))))... (-27.27 = -27.78 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:52 2006