Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,529,928 – 5,530,025 |
Length | 97 |
Max. P | 0.858321 |
Location | 5,529,928 – 5,530,025 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.54 |
Mean single sequence MFE | -29.56 |
Consensus MFE | -19.92 |
Energy contribution | -19.96 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.00 |
Structure conservation index | 0.67 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5529928 97 + 27905053 CUUUGCAGCGG--CAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGACGCCAAAAGGCAGGC--CCAUUCCCAUUCCCAUUCCCAUUCUCAUUCCCA--------- ..((((....)--)))...((((((((((.(.(((..(((..(((((((...(((....))).)).--..)))))))))))).)).)))))))).......--------- ( -27.20) >DroSec_CAF1 10823 93 + 1 CUUUGCAGCGGGACAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGACGCCAAAAGGCAGGC--CCAUUCCCA------UUCCCAUUCUCAUUCCCA--------- .........((((......((((((((...(((.....))).(((((((...(((....))).)).--..)))))..------...))))))))..)))).--------- ( -26.20) >DroSim_CAF1 8867 99 + 1 CUUUGCAGCGGGACAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGACGCCAAAAGGCAGGC--CCAUUCCCAUUCCCAUUCCCAUUCUCAUUCCCA--------- .........((((......((((((((((.(.(((..(((..(((((((...(((....))).)).--..)))))))))))).)).))))))))..)))).--------- ( -28.80) >DroEre_CAF1 9216 106 + 1 CUUUGCAGCGG--CAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGAUGCCAAAAGGCAGGC--ACAUUCUCAUUCCCCUUUCCAUUCCCAUUCACAUGCACACUC ...(((((.(.--...).)(.((((((((((.(((..(((.((((......((((....))))...--...)))))))))).)))))))))).).......))))..... ( -32.30) >DroYak_CAF1 9063 108 + 1 CUUUGCAGCGG--CAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGAUGCCAAAAGGCAGGCCCAUAUUCCCCUUCCCAUUUCCAUUCUCAUUCACAUGCACAUUC ...(((((.(.--...).)(((((((((((..(((((((((.((...((..((((....)))))))).)))))....))))..))))))))))).......))))..... ( -33.30) >consensus CUUUGCAGCGG__CAACUCGAGAAUGGAAGGCGGAAAAUGUAGGAAUCCGACGCCAAAAGGCAGGC__CCAUUCCCAUUCCCAUUCCCAUUCUCAUUCCCA_________ ...................((((((((...(((.....))).(((((((...(((....))).)).....)))))...........))))))))................ (-19.92 = -19.96 + 0.04)
Location | 5,529,928 – 5,530,025 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.54 |
Mean single sequence MFE | -37.16 |
Consensus MFE | -26.38 |
Energy contribution | -27.14 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.10 |
Mean z-score | -2.28 |
Structure conservation index | 0.71 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5529928 97 - 27905053 ---------UGGGAAUGAGAAUGGGAAUGGGAAUGGGAAUGG--GCCUGCCUUUUGGCGUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUG--CCGCUGCAAAG ---------.((.(((((((((((((.(((((((((((((.(--((..(((....)))))).).))))))...))))))..))))))))))..))).--))......... ( -35.70) >DroSec_CAF1 10823 93 - 1 ---------UGGGAAUGAGAAUGGGAA------UGGGAAUGG--GCCUGCCUUUUGGCGUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUGUCCCGCUGCAAAG ---------.((((.(((((((((((.------(((((((((--(((((((....))))..))...))))...))))))..))))))))))).....))))......... ( -33.60) >DroSim_CAF1 8867 99 - 1 ---------UGGGAAUGAGAAUGGGAAUGGGAAUGGGAAUGG--GCCUGCCUUUUGGCGUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUGUCCCGCUGCAAAG ---------.((((.(((((((((((.(((((((((((((.(--((..(((....)))))).).))))))...))))))..))))))))))).....))))......... ( -38.50) >DroEre_CAF1 9216 106 - 1 GAGUGUGCAUGUGAAUGGGAAUGGAAAGGGGAAUGAGAAUGU--GCCUGCCUUUUGGCAUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUG--CCGCUGCAAAG .((((.(((......(((((((((((.((..((((.((((.(--(..((((....)))).)).))))...))))..))...)))))))))))...))--)))))...... ( -39.40) >DroYak_CAF1 9063 108 - 1 GAAUGUGCAUGUGAAUGAGAAUGGAAAUGGGAAGGGGAAUAUGGGCCUGCCUUUUGGCAUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUG--CCGCUGCAAAG .....((((.(..(.((((((((((...(((..((..(((.((((((((((....))))..))...)))).)))..)).)))))))))))))..)..--)...))))... ( -38.60) >consensus _________UGGGAAUGAGAAUGGGAAUGGGAAUGGGAAUGG__GCCUGCCUUUUGGCGUCGGAUUCCUACAUUUUCCGCCUUCCAUUCUCGAGUUG__CCGCUGCAAAG ...............(((((((((((..((((((((((((.....((((((....))))..)))))))))...)))))...))))))))))).................. (-26.38 = -27.14 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:51 2006