Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,520,468 – 5,520,587 |
Length | 119 |
Max. P | 0.942235 |
Location | 5,520,468 – 5,520,587 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -29.12 |
Energy contribution | -29.62 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.97 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5520468 119 + 27905053 GGGAUUUUAUGUUCCUUUCAUAUAGUUGUUCUCAGUUACAAUU-UUGCGUUAGCGCAACUAAUUCUUAAAAAAAUAAACAGGAGCUGCCGGCUAGUUGCUCCGCACUGUAAAUGUAACUA ((((..((((((.......))))))....))))(((((((...-(((((....)))))......................(((((.((......)).)))))..........))))))). ( -27.30) >DroSim_CAF1 7330 119 + 1 GGGAUUUUCUGUUCCAUUCAUAUAGUUGUUCUCAGUUACAAUU-UUGCGUUAGCGCAACUAAUUCUUAAAAAAAUAAACAGGAGCGGCCGGCUAGUUGCUCCGCACUGUAAAUGUAACUA ((((....((((.........))))....))))(((((((...-(((((....)))))...................((((..((((..(((.....))))))).))))...))))))). ( -31.70) >DroEre_CAF1 7331 116 + 1 GGGAUUUUCUGUUCCUUUCAUAUAGU---UCUCAGUUACAAUU-UUGCGUUAGCGCAACUAAUUCUUAAAAAAAUAAACAGGAGCGGCCGGCUAGUUGCUCCGCACUGUAAAUGUAACUA ((((....((((.........)))).---))))(((((((...-(((((....)))))...................((((..((((..(((.....))))))).))))...))))))). ( -30.70) >DroYak_CAF1 7336 117 + 1 GGGAUCUUCUGUUCCUUUCAUAUAGU---UCUCAGUUACAAUUUUUGCGUUAGCGCAACUAAUUCUUAAAAAAAUAAACAGGAGCGGCCGGCUAGUUGCUCCGCACUGUAAAUGUAACUA ((((....((((.........)))).---))))(((((((....(((((....)))))...................((((..((((..(((.....))))))).))))...))))))). ( -30.70) >consensus GGGAUUUUCUGUUCCUUUCAUAUAGU___UCUCAGUUACAAUU_UUGCGUUAGCGCAACUAAUUCUUAAAAAAAUAAACAGGAGCGGCCGGCUAGUUGCUCCGCACUGUAAAUGUAACUA ((((....((((.........))))....))))(((((((....(((((....)))))......................((((((((......))))))))..........))))))). (-29.12 = -29.62 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:48 2006